Drugst. One—a plug-and-play solution for online systems medicine and network-based drug repurposing

A Maier, M Hartung, M Abovsky… - Nucleic Acids …, 2024 - academic.oup.com
In recent decades, the development of new drugs has become increasingly expensive and
inefficient, and the molecular mechanisms of most pharmaceuticals remain poorly …

Disease Network-Based Approaches to Study Comorbidity in Heart Failure: Current State and Future Perspectives

SA Gomez-Ochoa, JD Lanzer, RT Levinson - Current Heart Failure …, 2025 - Springer
Network approaches hold promise for unraveling the impact of comorbidities in the complex
presentation and genetics of HF. Methods that consider comorbidity presence and timing …

Demographic confounders distort inference of gene regulatory and gene co-expression networks in cancer

A Ketteler, DB Blumenthal - Briefings in Bioinformatics, 2023 - academic.oup.com
Gene regulatory networks (GRNs) and gene co-expression networks (GCNs) allow genome-
wide exploration of molecular regulation patterns in health and disease. The standard …

[HTML][HTML] Synovial fluid extracellular vesicles as arthritis biomarkers: the added value of lipid-profiling and integrated omics

L Varela, CHA van de Lest… - Extracellular Vesicles …, 2024 - oaepublish.com
Arthritis, a diverse group of inflammatory joint disorders, poses great challenges in early
diagnosis and targeted treatment. Timely intervention is imperative, yet conventional …

A Multi‐Dimensional Approach to Map Disease Relationships Challenges Classical Disease Views

L Möbus, A Serra, M Fratello, A Pavel… - Advanced …, 2024 - Wiley Online Library
The categorization of human diseases is mainly based on the affected organ system and
phenotypic characteristics. This is limiting the view to the pathological manifestations, while …

Optimized network based natural language processing approach to reveal disease comorbidities in COVID-19

ET Duman, G Tuna, E Ak, G Avsar, P Pir - Scientific Reports, 2024 - nature.com
A novel virus emerged from Wuhan, China, at the end of 2019 and quickly evolved into a
pandemic, significantly impacting various industries, especially healthcare. One critical …

Drug Repurposing through Network Medicine

S Sadegh - 2024 - mediatum.ub.tum.de
The dissertation seeks to improve drug research efficiency through drug repurposing, the
exploration of new applications for existing drugs. The dissertation presents CoVex …

PARADYS: Patient-specific Ranking of Genes Driving Dysregulation in Cancer and Therapeutic Implications

F Woller, S Goizueta, J Kiederle, D Blumenthal - Authorea Preprints, 2024 - techrxiv.org
In cancer, most somatic mutation are so-called passenger mutations with no functional
impact on disease development. Only a subset of the mutations act as drivers and are …

From Mouse Models to Patients: A Comparative Bioinformatic Analysis of HFpEF and HFrEF

JD Lanzer - 2023 - archiv.ub.uni-heidelberg.de
Heart failure (HF) represents an immense health burden with currently no curative
therapeutic strategies. Study of HF patient heterogeneity has led to the recognition of HF …

Gene co-expression poorly reflects expert-curated transcription factor-target gene regulation

S Sarkar, DB Blumenthal - 2024 - researchsquare.com
Gene co-expression networks (GCNs) are networks with genes as nodes and edges that
indicate correlation between two genes' expression profiles across several samples. Since …