BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models

HL Li, YH Pang, B Liu - Nucleic acids research, 2021 - academic.oup.com
In order to uncover the meanings of 'book of life', 155 different biological language models
(BLMs) for DNA, RNA and protein sequence analysis are discussed in this study, which are …

Applicability and interpretability of Ward's hierarchical agglomerative clustering with or without contiguity constraints

N Randriamihamison, N Vialaneix, P Neuvial - Journal of Classification, 2021 - Springer
Hierarchical agglomerative clustering (HAC) with Ward's linkage has been widely used
since its introduction by Ward (Journal of the American Statistical Association, 58 (301), 236 …

[HTML][HTML] Seawater intrusion pattern recognition supported by unsupervised learning: A systematic review and application

C Narvaez-Montoya, J Mahlknecht… - Science of The Total …, 2023 - Elsevier
Seawater intrusion is among the world's leading causes of groundwater contamination, as
salty water can affect potable water access, food production, and ecosystem functions. To …

Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis

M Dapas, FTJ Lin, GN Nadkarni, R Sisk, RS Legro… - PLoS …, 2020 - journals.plos.org
Background Polycystic ovary syndrome (PCOS) is a common, complex genetic disorder
affecting up to 15% of reproductive-age women worldwide, depending on the diagnostic …

Differential but complementary HIF1α and HIF2α transcriptional regulation

NL Downes, N Laham-Karam, MU Kaikkonen… - Molecular Therapy, 2018 - cell.com
Effective vascular regeneration could provide therapeutic benefit for multiple pathologies,
especially in chronic peripheral artery disease (PAD) and myocardial ischemia. The hypoxia …

Ecological risk assessment and source apportionment of heavy metals contamination: An appraisal based on the Tellus soil survey

A Keshavarzi, V Kumar, G Ertunç, EC Brevik - … Geochemistry and Health, 2021 - Springer
It is imperative to comprehend the level and spatial distribution of soil pollution with heavy
metals to find sustainable management approaches for affected soils. Selected heavy …

ClustGeo: an R package for hierarchical clustering with spatial constraints

M Chavent, V Kuentz-Simonet, A Labenne… - Computational …, 2018 - Springer
In this paper, we propose a Ward-like hierarchical clustering algorithm including
spatial/geographical constraints. Two dissimilarity matrices D_0 D 0 and D_1 D 1 are …

An empirical analysis of domestic electricity load profiles: Who consumes how much and when?

G Trotta - Applied Energy, 2020 - Elsevier
With the increased share of renewables in power generation, end users play a key role in
keeping the demand at levels that better match variable supply, maintaining lower overall …

A spatio-temporal clustering and diagnosis method for concrete arch dams using deformation monitoring data

B Chen, T Hu, Z Huang, C Fang - Structural Health …, 2019 - journals.sagepub.com
The timely analysis of deformation monitoring data and reasonable diagnosis of the
structural health are key tasks in dam health monitoring studies. This article presents a …

Effect of Biochar on Microbial Growth: A Metabolomics and Bacteriological Investigation in E. coli

RA Hill, J Hunt, E Sanders, M Tran… - … science & technology, 2019 - ACS Publications
Biochar has been proposed as a soil amendment in agricultural applications due to its
advantageous adsorptive properties, high porosity, and low cost. These properties allow …