[HTML][HTML] Metabolite discovery: Biochemistry's scientific driver

M Giera, O Yanes, G Siuzdak - Cell metabolism, 2022 - cell.com
Metabolite identification represents a major challenge, and opportunity, for biochemistry.
The collective characterization and quantification of metabolites in living organisms, with its …

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

M Gstaiger, R Aebersold - Nature Reviews Genetics, 2009 - nature.com
The systematic and quantitative molecular analysis of mutant organisms that has been
pioneered by studies on mutant metabolomes and transcriptomes holds great promise for …

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

LMF De Godoy, JV Olsen, J Cox, ML Nielsen… - Nature, 2008 - nature.com
Mass spectrometry is a powerful technology for the analysis of large numbers of
endogenous proteins,. However, the analytical challenges associated with comprehensive …

Linear motif atlas for phosphorylation-dependent signaling

ML Miller, LJ Jensen, F Diella, C Jørgensen, M Tinti… - Science …, 2008 - science.org
Systematic and quantitative analysis of protein phosphorylation is revealing dynamic
regulatory networks underlying cellular responses to environmental cues. However …

Systems medicine: the future of medical genomics and healthcare

C Auffray, Z Chen, L Hood - Genome medicine, 2009 - Springer
High-throughput technologies for DNA sequencing and for analyses of transcriptomes,
proteomes and metabolomes have provided the foundations for deciphering the structure …

The coming age of complete, accurate, and ubiquitous proteomes

M Mann, NA Kulak, N Nagaraj, J Cox - Molecular cell, 2013 - cell.com
High-resolution mass spectrometry (MS)-based proteomics has progressed tremendously
over the years. For model organisms like yeast, we can now quantify complete proteomes in …

Isotope dilution strategies for absolute quantitative proteomics

V Brun, C Masselon, J Garin, A Dupuis - Journal of proteomics, 2009 - Elsevier
The development of mass spectrometry (MS)-based methodologies for high-throughput
protein identification has generated a concomitant need for protein quantification. Numerous …

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

VA Fusaro, DR Mani, JP Mesirov, SA Carr - Nature biotechnology, 2009 - nature.com
Protein biomarker discovery produces lengthy lists of candidates that must subsequently be
verified in blood or other accessible biofluids. Use of targeted mass spectrometry (MS) to …

Non-model organisms, a species endangered by proteogenomics

J Armengaud, J Trapp, O Pible, O Geffard… - Journal of …, 2014 - Elsevier
Previously, large-scale proteomics was possible only for organisms whose genomes were
sequenced, meaning the most common model organisms. The use of next-generation …

2DE: the phoenix of proteomics

BM Oliveira, JR Coorssen, D Martins-de-Souza - Journal of proteomics, 2014 - Elsevier
Given the rapid developments in mass spectrometry (MS) in terms of sensitivity, mass
accuracy, and throughput, some have suggested that two-dimensional gel electrophoresis …