Sequencing and characterizing short tandem repeats in the human genome

HA Tanudisastro, IW Deveson, H Dashnow… - Nature Reviews …, 2024 - nature.com
Short tandem repeats (STRs) are highly polymorphic sequences throughout the human
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …

Current trends in microsatellite genotyping

E Guichoux, L Lagache, S Wagner… - Molecular ecology …, 2011 - Wiley Online Library
Microsatellites have been popular molecular markers ever since their advent in the late
eighties. Despite growing competition from new genotyping and sequencing techniques, the …

microchecker: software for identifying and correcting genotyping errors in microsatellite data

C Van Oosterhout, WF Hutchinson… - Molecular ecology …, 2004 - Wiley Online Library
DNA degradation, low DNA concentrations and primer‐site mutations may result in the
incorrect assignment of microsatellite genotypes, potentially biasing population genetic …

Microsatellites: simple sequences with complex evolution

H Ellegren - Nature reviews genetics, 2004 - nature.com
Few genetic markers, if any, have found such widespread use as microsatellites, or
simple/short tandem repeats. Features such as hypervariability and ubiquitous occurrence …

Microsatellite null alleles and estimation of population differentiation

MP Chapuis, A Estoup - Molecular biology and evolution, 2007 - academic.oup.com
Microsatellite null alleles are commonly encountered in population genetics studies, yet little
is known about their impact on the estimation of population differentiation. Computer …

Genotyping errors: causes, consequences and solutions

F Pompanon, A Bonin, E Bellemain… - Nature Reviews …, 2005 - nature.com
Although genotyping errors affect most data and can markedly influence the biological
conclusions of a study, they are too often neglected. Errors have various causes, but their …

Genetic content of wild-type human cytomegalovirus

A Dolan, C Cunningham, RD Hector… - Journal of General …, 2004 - microbiologyresearch.org
The genetic content of wild-type human cytomegalovirus was investigated by sequencing
the 235 645 bp genome of a low passage strain (Merlin). Substantial regions of the genome …

Microsatellites and their genomic distribution, evolution, function and applications: a review with special reference to fish genetics

DA Chistiakov, B Hellemans, FAM Volckaert - Aquaculture, 2006 - Elsevier
Microsatellites represent codominant molecular genetic markers, which are ubiquitously
distributed within genomes. Due to their high level of polymorphism, relatively small size and …

Mutational dynamics of microsatellites

A Bhargava, FF Fuentes - Molecular biotechnology, 2010 - Springer
Microsatellites are a ubiquitous class of simple repetitive DNA sequences, which are
widespread in both eukaryotic and prokaryotic genomes. The use of microsatellites as …

The rise, fall and renaissance of microsatellites in eukaryotic genomes

E Buschiazzo, NJ Gemmell - Bioessays, 2006 - Wiley Online Library
Microsatellites are among the most versatile of genetic markers, being used in an impressive
number of biological applications. However, the evolutionary dynamics of these markers …