The evolutionary relationships among organisms have traditionally been represented using
rooted phylogenetic trees. However, due to reticulate processes such as hybridization or …

Combinatorial structure and algorithms for deducing genetic recombination history,
represented by ancestral recombination graphs and other networks, and their role in the …

Phylogenetic networks generalize phylogenetic trees in order to model reticulation events.
Although the comparison of phylogenetic trees is well studied, and there are multiple ways …

Phylogenetic networks are special graphs that generalize phylogenetic trees to allow for
modeling of non-treelike evolutionary histories. The ability to sequence multiple genetic …

Phylogenetic networks represent the evolution of organisms that have undergone reticulate
events, such as recombination, hybrid speciation or lateral gene transfer. An important way …

A large class of phylogenetic networks can be obtained from trees by the addition of
horizontal edges between the tree edges. These networks are called tree-based networks …

Phylogenetic trees and networks are leaf-labelled graphs that are used to describe
evolutionary histories of species. The Tree Containment problem asks whether a given …

Phylogenetic networks are used in biology to represent evolutionary histories. The class of
orchard phylogenetic networks was recently introduced for their computational benefits …

Rooted phylogenetic networks provide an explicit representation of the evolutionary history
of a set X of sampled species. In contrast to phylogenetic trees which show only speciation …

The assessment of phylogenetic network reconstruction methods requires the ability to
compare phylogenetic networks. This is the first in a series of papers devoted to the analysis …