The Angiotensin II AT1 Receptor Structure-Activity Correlations in the Light of Rhodopsin Structure

L Oliveira, CM Costa-Neto, CR Nakaie… - Physiological …, 2007 - journals.physiology.org
The most prevalent physiological effects of ANG II, the main product of the renin-angiotensin
system, are mediated by the AT1 receptor, a rhodopsin-like AGPCR. Numerous studies of …

The study of G‐protein coupled receptor oligomerization with computational modeling and bioinformatics

M Filizola, H Weinstein - The FEBS journal, 2005 - Wiley Online Library
To achieve a structural context for the analysis of G‐protein coupled receptor (GPCR)
oligomers, molecular modeling must be used to predict the corresponding interaction …

3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities

RK Kuipers, HJ Joosten… - Proteins: Structure …, 2010 - Wiley Online Library
Ten years of experience with molecular class–specific information systems (MCSIS) such as
with the hand‐curated G protein–coupled receptor database (GPCRDB) or the …

GPCRDB: information system for G protein-coupled receptors

B Vroling, M Sanders, C Baakman… - Nucleic acids …, 2010 - academic.oup.com
The GPCRDB is a Molecular Class-Specific Information System (MCSIS) that collects,
combines, validates and disseminates large amounts of heterogeneous data on G protein …

Correlated mutation analyses on very large sequence families

L Oliveira, ACM Paiva, G Vriend - Chembiochem, 2002 - Wiley Online Library
The'omics era'(the era of genomics, proteomics, and so forth) is marked by a flood of data
that need to be interpreted to become useful information. Thanks to genome sequencing …

Co-evolving residues in membrane proteins

A Fuchs, AJ Martin-Galiano, M Kalman… - …, 2007 - academic.oup.com
Motivation: The analysis of co-evolving residues has been exhaustively evaluated for the
prediction of intramolecular amino acid contacts in soluble proteins. Although a variety of …

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models

NG Sgourakis, PG Bagos, PK Papasaikas… - BMC …, 2005 - Springer
Background G-Protein coupled receptors (GPCRs) comprise the largest group of eukaryotic
cell surface receptors with great pharmacological interest. A broad range of native ligands …

Snooker: a structure-based pharmacophore generation tool applied to class A GPCRs

MPA Sanders, S Verhoeven, C de Graaf… - Journal of chemical …, 2011 - ACS Publications
G-protein coupled receptors (GPCRs) are important drug targets for various diseases and of
major interest to pharmaceutical companies. The function of individual members of this …

GRIS: glycoprotein-hormone receptor information system

J Van Durme, F Horn, S Costagliola… - Molecular …, 2006 - academic.oup.com
The glycoprotein-hormone receptor information system (GRIS) presents a comprehensive
view on all available molecular data for the lutropin/choriogonadotropin receptor, follitropin …

A two‐entropies analysis to identify functional positions in the transmembrane region of class AG protein‐coupled receptors

K Ye, EWM Lameijer, MW Beukers… - PROTEINS: Structure …, 2006 - Wiley Online Library
Residues in the transmembrane region of G protein‐coupled receptors (GPCRs) are
important for ligand binding and activation, but the function of individual positions is poorly …