[HTML][HTML] Genome evolution and diversity of wild and cultivated potatoes

D Tang, Y Jia, J Zhang, H Li, L Cheng, P Wang, Z Bao… - Nature, 2022 - nature.com
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …

Structural, functional, and genomic diversity of plant NLR proteins: an evolved resource for rational engineering of plant immunity

F Monteiro, MT Nishimura - Annual review of phytopathology, 2018 - annualreviews.org
Plants employ a diverse intracellular system of NLR (nucleotide binding–leucine-rich repeat)
innate immune receptors to detect pathogens of all types. These receptors represent …

Machine learning approaches and their current application in plant molecular biology: A systematic review

JCF Silva, RM Teixeira, FF Silva… - Plant Science, 2019 - Elsevier
Abstract Machine learning (ML) is a field of artificial intelligence that has rapidly emerged in
molecular biology, thus allowing the exploitation of Big Data concepts in plant genomics. In …

[HTML][HTML] Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding

Y Zhang, M Zhao, J Tan, M Huang, X Chu, Y Li… - Nature Genetics, 2024 - nature.com
To decipher the genetic diversity within the cucurbit genus Citrullus, we generated telomere-
to-telomere (T2T) assemblies of 27 distinct genotypes, encompassing all seven Citrullus …

[HTML][HTML] RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family

J Kourelis, T Sakai, H Adachi, S Kamoun - PLoS Biology, 2021 - journals.plos.org
Reference datasets are critical in computational biology. They help define canonical
biological features and are essential for benchmarking studies. Here, we describe a …

[HTML][HTML] Cell-type-specific responses to fungal infection in plants revealed by single-cell transcriptomics

B Tang, L Feng, MT Hulin, P Ding, W Ma - Cell Host & Microbe, 2023 - cell.com
Pathogen infection is a dynamic process. Here, we employ single-cell transcriptomics to
investigate plant response heterogeneity. By generating an Arabidopsis thaliana leaf atlas …

[HTML][HTML] Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots

K Coe, H Bostan, W Rolling, S Turner-Hissong… - Nature Plants, 2023 - nature.com
Here an improved carrot reference genome and resequencing of 630 carrot accessions
were used to investigate carrot domestication and improvement. The study demonstrated …

A phased Vanilla planifolia genome enables genetic improvement of flavour and production

T Hasing, H Tang, M Brym, F Khazi, T Huang… - Nature Food, 2020 - nature.com
The global supply of vanilla extract is primarily sourced from the cured beans of the tropical
orchid species Vanilla planifolia. Vanilla plants were collected from Mesoamerica, clonally …

Global pharmacopoeia genome database is an integrated and mineable genomic database for traditional medicines derived from eight international pharmacopoeias

B Liao, H Hu, S Xiao, G Zhou, W Sun, Y Chu… - Science China Life …, 2021 - Springer
Genomic data have demonstrated considerable traction in accelerating contemporary
studies in traditional medicine. However, the lack of a uniform format and dispersed storage …

PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process

J Calle Garcia, A Guadagno… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The Plant Resistance Genes database (PRGdb; http://prgdb. org/prgdb4/) has been
greatly expanded, keeping pace with the increasing amount of available knowledge and …