State of the art of molecular visualization in immersive virtual environments

D Kuťák, P Vázquez, T Isenberg… - Computer Graphics …, 2023 - Wiley Online Library
Visualization plays a crucial role in molecular and structural biology. It has been successfully
applied to a variety of tasks, including structural analysis and interactive drug design. While …

Wielding the power of interactive molecular simulations

A Lanrezac, N Férey, M Baaden - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Since the dawn of the computer age, scientists have designed devices to represent
molecular structures and developed tools to simulate their dynamic behavior in silico. To this …

Adenita: interactive 3D modelling and visualization of DNA nanostructures

E De Llano, H Miao, Y Ahmadi, AJ Wilson… - Nucleic acids …, 2020 - academic.oup.com
DNA nanotechnology is a rapidly advancing field, which increasingly attracts interest in
many different disciplines, such as medicine, biotechnology, physics and biocomputing. The …

Pondering the concept of abstraction in (illustrative) visualization

I Viola, T Isenberg - IEEE transactions on visualization and …, 2017 - ieeexplore.ieee.org
We explore the concept of abstraction as it is used in visualization, with the ultimate goal of
understanding and formally defining it. Researchers so far have used the concept of …

Vivern–a virtual environment for multiscale visualization and modeling of DNA nanostructures

D Kuťák, MN Selzer, J Byška… - … on Visualization and …, 2021 - ieeexplore.ieee.org
DNA nanostructures offer promising applications, particularly in the biomedical domain, as
they can be used for targeted drug delivery, construction of nanorobots, or as a basis for …

Multiscale molecular visualization

H Miao, T Klein, D Kouřil, P Mindek, K Schatz… - Journal of molecular …, 2019 - Elsevier
We provide a high-level survey of multiscale molecular visualization techniques, with a focus
on application-domain questions, challenges, and tasks. We provide a general introduction …

Visual abstraction

I Viola, M Chen, T Isenberg - Foundations of data visualization, 2020 - Springer
In this chapter, we revisit the concept of abstraction as it is used in visualization and put it on
a solid formal footing. While the term “abstraction” is utilized in many scientific disciplines …

Multiscale visualization: A structured literature analysis

E Cakmak, D Jäckle, T Schreck… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Multiscale visualizations are typically used to analyze multiscale processes and data in
various application domains, such as the visual exploration of hierarchical genome …

[PDF][PDF] DNA origami design: a how-to tutorial

JM Majikes, JA Liddle - J. Res. Natl. Inst. Stand. Technol, 2021 - researchgate.net
While the design and assembly of DNA origami are straightforward, its relative novelty as a
nanofabrication technique means that the tools and methods for designing new structures …

Scale Trotter: Illustrative visual travels across negative scales

S Halladjian, H Miao, D Kouřil… - … on Visualization and …, 2019 - ieeexplore.ieee.org
We present ScaleTrotter, a conceptual framework for an interactive, multi-scale visualization
of biological mesoscale data and, specifically, genome data. ScaleTrotter allows viewers to …