On the occasion of their fiftieth birthday, it is opportune to review the first half century of Ramachandran plots. In the present review, some of the most relevant aspects of this fifty …
S Jo, M Vargyas, J Vasko-Szedlar… - Nucleic acids …, 2008 - academic.oup.com
PBEQ-Solver provides a web-based graphical user interface to read biomolecular structures, solve the Poisson-Boltzmann (PB) equations and interactively visualize the …
AG de Brevern - Scientific reports, 2016 - nature.com
The functional properties of a protein primarily depend on its three-dimensional (3D) structure. These properties have classically been assigned, visualized and analysed on the …
SW Park, BH Lee, SH Song, MK Kim - Journal of Structural Biology, 2023 - Elsevier
Ramachandran plots, which describe protein structures by plotting the dihedral angle pairs of the backbone on a two-dimensional plane, have played an important role in structural …
CO Mackenzie, J Zhou… - Proceedings of the …, 2016 - National Acad Sciences
Here, we systematically decompose the known protein structural universe into its basic elements, which we dub tertiary structural motifs (TERMs). A TERM is a compact backbone …
Background Secondary structures are elements of great importance in structural biology, biochemistry and bioinformatics. They are broadly composed of two repetitive structures …
The pioneering work of Ramachandran and colleagues emphasized the dominance of steric constraints in specifying the structure of polypeptides. The ubiquitous Ramachandran plot of …
BE Bowler - Current opinion in structural biology, 2012 - Elsevier
The denatured state ensemble (DSE) of unfolded proteins, once considered to be well- modeled by an energetically featureless random coil, is now well-known to contain flickering …
Y Zhao, PMU Ung, G Zahoránszky-Kőhalmi… - Cell reports, 2020 - cell.com
G-protein-gated inwardly rectifying K+(GIRK) channels are essential effectors of inhibitory neurotransmission in the brain. GIRK channels have been implicated in diseases with …