Performance measures in evaluating machine learning based bioinformatics predictors for classifications

Y Jiao, P Du - Quantitative Biology, 2016 - Springer
Background Many existing bioinformatics predictors are based on machine learning
technology. When applying these predictors in practical studies, their predictive …

Detecting epistasis in human complex traits

WH Wei, G Hemani, CS Haley - Nature Reviews Genetics, 2014 - nature.com
Genome-wide association studies (GWASs) have become the focus of the statistical analysis
of complex traits in humans, successfully shedding light on several aspects of genetic …

Detecting epistasis with the marginal epistasis test in genetic mapping studies of quantitative traits

L Crawford, P Zeng, S Mukherjee, X Zhou - PLoS genetics, 2017 - journals.plos.org
Epistasis, commonly defined as the interaction between multiple genes, is an important
genetic component underlying phenotypic variation. Many statistical methods have been …

epiACO-a method for identifying epistasis based on ant Colony optimization algorithm

Y Sun, J Shang, JX Liu, S Li, CH Zheng - BioData mining, 2017 - Springer
Background Identifying epistasis or epistatic interactions, which refer to nonlinear interaction
effects of single nucleotide polymorphisms (SNPs), is essential to understand disease …

[HTML][HTML] Omics biomarkers in ophthalmology

S Lauwen, EK de Jong, DJ Lefeber… - … & visual science, 2017 - tvst.arvojournals.org
Abstract “Omics” refers to high-throughput analyses of genes, proteins, or metabolites in a
biological system, and is increasingly used for ophthalmic research. These system-based …

Cloud computing for detecting high-order genome-wide epistatic interaction via dynamic clustering

X Guo, Y Meng, N Yu, Y Pan - BMC bioinformatics, 2014 - Springer
Backgroud Taking the advan tage of high-throughput single nucleotide polymorphism (SNP)
genotyping technology, large genome-wide association studies (GWASs) have been …

Photoacoustic imaging

Y Zhang, H Hong, W Cai - Cold Spring Harbor Protocols, 2011 - cshprotocols.cshlp.org
BACKGROUND More than a century ago, Alexander G. Bell first observed the photoacoustic
effect. He found that absorption of electromagnetic waveforms, such as radio frequency (rf) …

Performance analysis of novel methods for detecting epistasis

J Shang, J Zhang, Y Sun, D Liu, D Ye, Y Yin - BMC bioinformatics, 2011 - Springer
Background Epistasis is recognized fundamentally important for understanding the
mechanism of disease-causing genetic variation. Though many novel methods for detecting …

Genome-wide interaction-based association analysis identified multiple new susceptibility loci for common diseases

Y Liu, H Xu, S Chen, X Chen, Z Zhang, Z Zhu… - PLoS …, 2011 - journals.plos.org
Genome-wide interaction-based association (GWIBA) analysis has the potential to identify
novel susceptibility loci. These interaction effects could be missed with the prevailing …

FHSA-SED: two-locus model detection for genome-wide association study with harmony search algorithm

S Tuo, J Zhang, X Yuan, Y Zhang, Z Liu - PloS one, 2016 - journals.plos.org
Motivation Two-locus model is a typical significant disease model to be identified in genome-
wide association study (GWAS). Due to intensive computational burden and diversity of …