[HTML][HTML] An overview of descriptors to capture protein properties–Tools and perspectives in the context of QSAR modeling

J Emonts, JF Buyel - Computational and Structural Biotechnology Journal, 2023 - Elsevier
Proteins are important ingredients in food and feed, they are the active components of many
pharmaceutical products, and they are necessary, in the form of enzymes, for the success of …

Prediction of protein structural class for low-similarity sequences using Chou's pseudo amino acid composition and wavelet denoising

B Yu, L Lou, S Li, Y Zhang, W Qiu, X Wu… - Journal of Molecular …, 2017 - Elsevier
Prediction of protein structural class plays an important role in protein structure and function
analysis, drug design and many other biological applications. Prediction of protein structural …

Graph theory-based sequence descriptors as remote homology predictors

G Agüero-Chapin, D Galpert, R Molina-Ruiz… - Biomolecules, 2019 - mdpi.com
Alignment-free (AF) methodologies have increased in popularity in the last decades as
alternative tools to alignment-based (AB) algorithms for performing comparative sequence …

Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC

E Contreras-Torres - Journal of Theoretical Biology, 2018 - Elsevier
In this study, I introduce novel global and local 0D-protein descriptors based on a statistical
quantity named Total Sum of Squares (TSS). This quantity represents the sum of the squares …

Auxiliary model based least squares iterative algorithms for parameter estimation of bilinear systems using interval-varying measurements

M Li, X Liu - IEEE access, 2018 - ieeexplore.ieee.org
This paper focuses on the parameter estimation of a class of bilinear systems, for which the
input-output representation is derived by eliminating the state variables in the systems …

Least-squares-based iterative and gradient-based iterative estimation algorithms for bilinear systems

M Li, X Liu, F Ding - Nonlinear Dynamics, 2017 - Springer
For bilinear systems with colored noise, this paper gives the input–output representation of
the bilinear systems through eliminating the state variables in the model and derives a three …

Scaffold-hopping from synthetic drugs by holistic molecular representation

F Grisoni, D Merk, R Byrne, G Schneider - Scientific reports, 2018 - nature.com
The discovery of novel ligand chemotypes allows to explore uncharted regions in chemical
space, thereby potentially improving synthetic accessibility, potency, and the drug-likeness …

Recursive generalized extended least squares and RML algorithms for identification of bilinear systems with ARMA noise

Z Hafezi, MM Arefi - ISA transactions, 2019 - Elsevier
Bilinear systems are considered as a particular class of nonlinear systems including the
state variables which are typically used for online identification. By using a recursive …

Protein distribution in lupin protein isolates from Lupinus angustifolius L. prepared by various isolation techniques

IS Muranyi, D Volke, R Hoffmann, P Eisner, T Herfellner… - Food chemistry, 2016 - Elsevier
Differences in the protein distribution of various protein isolates from Lupinus angustifolius L.
Vitabor were identified as affected by the isolation procedure (alkaline and/or salt-induced …

Recursive least squares parameter estimation algorithms for a class of nonlinear stochastic systems with colored noise based on the auxiliary model and data filtering

L Wang, Y He - IEEE Access, 2019 - ieeexplore.ieee.org
This paper considers the parameter identification for a class of nonlinear stochastic systems
with colored noise. We filter the input-output data by using an estimated noise transfer …