[HTML][HTML] A survey on recent named entity recognition and relationship extraction techniques on clinical texts

P Bose, S Srinivasan, WC Sleeman IV, J Palta… - Applied Sciences, 2021 - mdpi.com
Significant growth in Electronic Health Records (EHR) over the last decade has provided an
abundance of clinical text that is mostly unstructured and untapped. This huge amount of …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

[HTML][HTML] The personal health applications of machine learning techniques in the internet of behaviors

Z Amiri, A Heidari, M Darbandi, Y Yazdani… - Sustainability, 2023 - mdpi.com
With the swift pace of the development of artificial intelligence (AI) in diverse spheres, the
medical and healthcare fields are utilizing machine learning (ML) methodologies in …

[HTML][HTML] Bidirectional RNN for medical event detection in electronic health records

AN Jagannatha, H Yu - Proceedings of the conference. Association …, 2016 - ncbi.nlm.nih.gov
Sequence labeling for extraction of medical events and their attributes from unstructured text
in Electronic Health Record (EHR) notes is a key step towards semantic understanding of …

TaggerOne: joint named entity recognition and normalization with semi-Markov Models

R Leaman, Z Lu - Bioinformatics, 2016 - academic.oup.com
Motivation: Text mining is increasingly used to manage the accelerating pace of the
biomedical literature. Many text mining applications depend on accurate named entity …

[HTML][HTML] Comparing deep learning and concept extraction based methods for patient phenotyping from clinical narratives

S Gehrmann, F Dernoncourt, Y Li, ET Carlson, JT Wu… - PloS one, 2018 - journals.plos.org
In secondary analysis of electronic health records, a crucial task consists in correctly
identifying the patient cohort under investigation. In many cases, the most valuable and …

[HTML][HTML] Bert-based ranking for biomedical entity normalization

Z Ji, Q Wei, H Xu - AMIA Summits on Translational Science …, 2020 - ncbi.nlm.nih.gov
Developing high-performance entity normalization algorithms that can alleviate the term
variation problem is of great interest to the biomedical community. Although deep learning …

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

CH Wei, Y Peng, R Leaman, AP Davis, CJ Mattingly… - Database, 2016 - academic.oup.com
Manually curating chemicals, diseases and their relationships is significantly important to
biomedical research, but it is plagued by its high cost and the rapid growth of the biomedical …

Development of phenotype algorithms using electronic medical records and incorporating natural language processing

KP Liao, T Cai, GK Savova, SN Murphy, EW Karlson… - bmj, 2015 - bmj.com
Electronic medical records are emerging as a major source of data for clinical and
translational research studies, although phenotypes of interest need to be accurately …

Overview of the first natural language processing challenge for extracting medication, indication, and adverse drug events from electronic health record notes (MADE …

A Jagannatha, F Liu, W Liu, H Yu - Drug safety, 2019 - Springer
Introduction This work describes the Medication and Adverse Drug Events from Electronic
Health Records (MADE 1.0) corpus and provides an overview of the MADE 1.0 2018 …