[HTML][HTML] Systematic multi-omics integration (MOI) approach in plant systems biology

IN Jamil, J Remali, KA Azizan… - Frontiers in plant …, 2020 - frontiersin.org
Across all facets of biology, the rapid progress in high-throughput data generation has
enabled us to perform multi-omics systems biology research. Transcriptomics, proteomics …

Analysis of metabolomic data: tools, current strategies and future challenges for omics data integration

A Cambiaghi, M Ferrario… - Briefings in bioinformatics, 2017 - academic.oup.com
Metabolomics is a rapidly growing field consisting of the analysis of a large number of
metabolites at a system scale. The two major goals of metabolomics are the identification of …

Integrated omics analysis of specialized metabolism in medicinal plants

A Rai, K Saito, M Yamazaki - The Plant Journal, 2017 - Wiley Online Library
Medicinal plants are a rich source of highly diverse specialized metabolites with important
pharmacological properties. Until recently, plant biologists were limited in their ability to …

Transcriptomic and metabolomic data integration

R Cavill, D Jennen, J Kleinjans… - Briefings in …, 2016 - academic.oup.com
Many studies now produce parallel data sets from different omics technologies; however, the
task of interpreting the acquired data in an integrated fashion is not trivial. This review covers …

Effects of pre-analytical processes on blood samples used in metabolomics studies

P Yin, R Lehmann, G Xu - Analytical and bioanalytical chemistry, 2015 - Springer
Every day, analytical and bio-analytical chemists make sustained efforts to improve the
sensitivity, specificity, robustness, and reproducibility of their methods. Especially in targeted …

Updates in metabolomics tools and resources: 2014–2015

BB Misra, JJJ van der Hooft - Electrophoresis, 2016 - Wiley Online Library
Data processing and interpretation represent the most challenging and time‐consuming
steps in high‐throughput metabolomic experiments, regardless of the analytical platforms …

A comprehensive survey of the approaches for pathway analysis using multi-omics data integration

Z Maghsoudi, H Nguyen, A Tavakkoli… - Briefings in …, 2022 - academic.oup.com
Pathway analysis has been widely used to detect pathways and functions associated with
complex disease phenotypes. The proliferation of this approach is due to better …

The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet

H Liu, C Chen, Z Gao, J Min, Y Gu, J Jian, X Jiang… - …, 2017 - academic.oup.com
The blunt snout bream Megalobrama amblycephala is the economically most important
cyprinid fish species. As an herbivore, it can be grown by eco-friendly and resource …

Comparing the disrupting effects of short-, medium-and long-chain chlorinated Paraffins on cell viability and metabolism

X Ren, N Geng, H Zhang, F Wang, Y Gong… - Science of the total …, 2019 - Elsevier
With the phasing out of short-chain chlorinated paraffins (SCCPs), the production and
emissions of medium-and long-chain chlorinated paraffins (MCCPs and LCCPs) are …

Evaluation of steroidomics by liquid chromatography hyphenated to mass spectrometry as a powerful analytical strategy for measuring human steroid perturbations

F Jeanneret, D Tonoli, MF Rossier, M Saugy… - … of Chromatography A, 2016 - Elsevier
This review presents the evolution of steroid analytical techniques, including gas
chromatography coupled to mass spectrometry (GC–MS), immunoassay (IA) and targeted …