Bottlenecks in HIV-1 transmission: insights from the study of founder viruses

SB Joseph, R Swanstrom, ADM Kashuba… - Nature Reviews …, 2015 - nature.com
HIV-1 infection typically results from the transmission of a single viral variant, the
transmitted/founder (T/F) virus. Studies of these HIV-1 variants provide critical information …

HIV-1 pathogenesis: the virus

R Swanstrom, J Coffin - Cold Spring …, 2012 - perspectivesinmedicine.cshlp.org
Transmission of HIV-1 results in the establishment of a new infection, typically starting from a
single virus particle. That virion replicates to generate viremia and persistent infection in all …

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

RAJ Shankarappa, JB Margolick, SJ Gange… - Journal of …, 1999 - Am Soc Microbiol
To understand the high variability of the asymptomatic interval between primary human
immunodeficiency virus type 1 (HIV-1) infection and the development of AIDS, we studied …

Identification of unique hepatitis C virus quasispecies in the central nervous system and comparative analysis of internal translational efficiency of brain, liver, and …

DM Forton, P Karayiannis, N Mahmud… - Journal of …, 2004 - Am Soc Microbiol
Reports of cerebral dysfunction in chronic hepatitis C virus (HCV) infection have led to the
suggestion that HCV may infect the central nervous system (CNS). We used reverse …

Recent observations on HIV type-1 infection in the genital tract of men and women

RW Coombs, PS Reichelderfer, AL Landay - Aids, 2003 - journals.lww.com
The ultimate success of strategies to prevent sexual transmission of HIV depends, in part, on
a better understanding of the virological and immunological mechanisms that define sexual …

Human immunodeficiency virus type 1 population genetics and adaptation in newly infected individuals

M Kearney, F Maldarelli, W Shao, JB Margolick… - Journal of …, 2009 - Am Soc Microbiol
Studies on human immunodeficiency virus type 1 (HIV-1) diversity are critical for
understanding viral pathogenesis and the emergence of immune escape variants and for …

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

DI Boeras, PT Hraber, M Hurlston… - Proceedings of the …, 2011 - National Acad Sciences
The predominant mode of HIV-1 infection is heterosexual transmission, where a genetic
bottleneck is imposed on the virus quasispecies. To probe whether limited genetic diversity …

[PDF][PDF] Frequent compartmentalization of hepatitis C virus variants in circulating B cells and monocytes

D Ducoulombier, AM Roque‐Afonso, G Di Liberto… - …, 2004 - Wiley Online Library
Differences in the composition of the hepatitis C virus (HCV) quasispecies between plasma
and blood mononuclear cells (BMC) strongly suggest that BMCs support viral replication …

Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage

DR Chopera, Z Woodman, K Mlisana… - PLoS …, 2008 - journals.plos.org
One of the most important genetic factors known to affect the rate of disease progression in
HIV-infected individuals is the genotype at the Class I Human Leukocyte Antigen (HLA) …

HIV-1 envelope subregion length variation during disease progression

ME Curlin, R Zioni, SE Hawes, Y Liu, W Deng… - PLoS …, 2010 - journals.plos.org
The V3 loop of the HIV-1 Env protein is the primary determinant of viral coreceptor usage,
whereas the V1V2 loop region is thought to influence coreceptor binding and participate in …