Fourth report on chicken genes and chromosomes 2022

J Smith, JM Alfieri, N Anthony, P Arensburger… - … and genome research, 2023 - karger.com
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …

Taming transposable elements in livestock and poultry: a review of their roles and applications

P Zhao, C Peng, L Fang, Z Wang, GE Liu - Genetics Selection Evolution, 2023 - Springer
Livestock and poultry play a significant role in human nutrition by converting agricultural by-
products into high-quality proteins. To meet the growing demand for safe animal protein …

Multiple and diversified transposon lineages contribute to early and recent bivalve genome evolution

J Martelossi, F Nicolini, S Subacchi, D Pasquale… - BMC biology, 2023 - Springer
Abstract Background Transposable elements (TEs) can represent one of the major sources
of genomic variation across eukaryotes, providing novel raw materials for species …

A reference genome for the Harpy Eagle reveals steady demographic decline and chromosomal rearrangements in the origin of Accipitriformes

LEC Canesin, ST Vilaça, RRM Oliveira, F Al-Ajli… - Scientific Reports, 2024 - nature.com
Abstract The Harpy Eagle (Harpia harpyja) is an iconic species that inhabits forested
landscapes in Neotropical regions, with decreasing population trends mainly due to habitat …

Differential Conservation and Loss of Chicken Repeat 1 (CR1) Retrotransposons in Squamates Reveal Lineage-Specific Genome Dynamics Across Reptiles

SM Gable, NA Bushroe, JM Mendez… - Genome Biology and …, 2024 - academic.oup.com
Transposable elements (TEs) are repetitive DNA sequences which create mutations and
generate genetic diversity across the tree of life. In amniote vertebrates, TEs have been …

An annotated chromosome-scale reference genome for Eastern black-eared wheatear (Oenanthe melanoleuca)

V Peona, OM Palacios-Gimenez… - G3: Genes …, 2023 - academic.oup.com
Pervasive convergent evolution and in part high incidences of hybridization distinguish
wheatears (songbirds of the genus Oenanthe) as a versatile system to address questions at …

Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery

PM Benham, C Cicero, M Escalona… - Genome Biology and …, 2024 - academic.oup.com
Transposable elements (TE) play critical roles in shaping genome evolution. Highly
repetitive TE sequences are also a major source of assembly gaps making it difficult to fully …

Draft genome of Palmaria palmata and intraspecific genetic variations in the North-East Atlantic

S Rosignoli, M Inaba, M Schmid, M McHale, A Fort… - Algal Research, 2025 - Elsevier
The rhodophyte Palmaria palmata (L.) Weber & Mohr is one of the target species of a
growing European seaweed industry due to its high content of protein and essential amino …

Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery

PM Benham, C Cicero, M Escalona, E Beraut… - bioRxiv, 2023 - biorxiv.org
Transposable elements (TE) play critical roles in shaping genome evolution. However, the
highly repetitive sequence content of TEs is a major source of assembly gaps. This makes it …

Linked-read sequencing of eight falcons reveals a unique genomic architecture in flux

JJS Wilcox, B Arca-Ruibal, J Samour… - Genome biology and …, 2022 - academic.oup.com
Falcons are diverse birds of cultural and economic importance. They have undergone major
lineage-specific chromosomal rearrangements, resulting in greatly reduced chromosome …