[HTML][HTML] The ONIOM method and its applications

LW Chung, WMC Sameera, R Ramozzi… - Chemical …, 2015 - ACS Publications
The fields of theoretical and computational chemistry have come a long way since their
inception in the mid-20th century. Fifty years ago, only rudimentary approximations for very …

Real-time time-dependent electronic structure theory

X Li, N Govind, C Isborn, AE DePrince III… - Chemical …, 2020 - ACS Publications
Real-time electronic structure methods provide an unprecedented view of electron dynamics
and ultrafast spectroscopy on the atto-and femtosecond time scale with vast potential to yield …

Polarizable embedding QM/MM: the future gold standard for complex (bio) systems?

M Bondanza, M Nottoli, L Cupellini… - Physical Chemistry …, 2020 - pubs.rsc.org
Nowadays, hybrid QM/MM approaches are widely used to study (supra) molecular systems
embedded in complex biological matrices. However, in their common formulation, mutual …

Quantum mechanics/molecular mechanics modeling of enzymatic processes: Caveats and breakthroughs

MG Quesne, T Borowski… - Chemistry–A European …, 2016 - Wiley Online Library
Nature has developed large groups of enzymatic catalysts with the aim to transfer substrates
into useful products, which enables biosystems to perform all their natural functions. As …

General many-body framework for data-driven potentials with arbitrary quantum mechanical accuracy: Water as a case study

E Lambros, S Dasgupta, E Palos, S Swee… - Journal of Chemical …, 2021 - ACS Publications
We present a general framework for the development of data-driven many-body (MB)
potential energy functions (MB-QM PEFs) that represent the interactions between small …

QM/AMOEBA description of properties and dynamics of embedded molecules

M Nottoli, M Bondanza, P Mazzeo… - Wiley …, 2023 - Wiley Online Library
We describe the development, implementation, and application of a polarizable QM/MM
strategy, based on the AMOEBA polarizable force field, for calculating molecular properties …

Applications of large-scale density functional theory in biology

DJ Cole, NDM Hine - Journal of Physics: Condensed Matter, 2016 - iopscience.iop.org
Density functional theory (DFT) has become a routine tool for the computation of electronic
structure in the physics, materials and chemistry fields. Yet the application of traditional DFT …

Understanding charge dynamics in dense electronic manifolds in complex environments

F Perrella, A Petrone, N Rega - Journal of Chemical Theory and …, 2023 - ACS Publications
Photoinduced charge transfer (CT) excited states and their relaxation mechanisms can be
highly interdependent on the environment effects and the consequent changes in the …

Polarizable QM/MM approach with fluctuating charges and fluctuating dipoles: the QM/FQFμ model

T Giovannini, A Puglisi, M Ambrosetti… - Journal of chemical …, 2019 - ACS Publications
The novel polarizable FQFμ force field is proposed and coupled to a quantum mechanical
(QM) SCF Hamiltonian. The peculiarity of the resulting QM/FQFμ approach stands in the fact …

LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields

EG Kratz, AR Walker, L Lagardère… - Journal of …, 2016 - Wiley Online Library
We introduce an initial implementation of the LICHEM software package. LICHEM can
interface with Gaussian, PSI4, NWChem, TINKER, and TINKER–HP to enable QM/MM …