The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota

C Milani, S Duranti, F Bottacini, E Casey… - Microbiology and …, 2017 - Am Soc Microbiol
The human gut microbiota is engaged in multiple interactions affecting host health during
the host's entire life span. Microbes colonize the neonatal gut immediately following birth …

Mouse models for human intestinal microbiota research: a critical evaluation

F Hugenholtz, WM de Vos - Cellular and Molecular Life Sciences, 2018 - Springer
Since the early days of the intestinal microbiota research, mouse models have been used
frequently to study the interaction of microbes with their host. However, to translate the …

Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle

F Li, C Li, Y Chen, J Liu, C Zhang, B Irving… - Microbiome, 2019 - Springer
Background The symbiotic rumen microbiota is essential for the digestion of plant fibers and
contributes to the variation of production and health traits in ruminants. However, to date, the …

The effect of host genetics on the gut microbiome

MJ Bonder, A Kurilshikov, EF Tigchelaar, Z Mujagic… - Nature …, 2016 - nature.com
The gut microbiome is affected by multiple factors, including genetics. In this study, we
assessed the influence of host genetics on microbial species, pathways and gene ontology …

Genetic determinants of the gut microbiome in UK twins

JK Goodrich, ER Davenport, M Beaumont… - Cell host & …, 2016 - cell.com
Studies in mice and humans have revealed intriguing associations between host genetics
and the microbiome. Here we report a 16S rRNA-based analysis of the gut microbiome in …

Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

F Imhann, AV Vila, MJ Bonder, J Fu, D Gevers… - Gut, 2018 - gut.bmj.com
Objective Patients with IBD display substantial heterogeneity in clinical characteristics. We
hypothesise that individual differences in the complex interaction of the host genome and …

Host genetic variation impacts microbiome composition across human body sites

R Blekhman, JK Goodrich, K Huang, Q Sun… - Genome biology, 2015 - Springer
Background The composition of bacteria in and on the human body varies widely across
human individuals, and has been associated with multiple health conditions. While microbial …

Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows

GF Difford, DR Plichta, P Løvendahl, J Lassen… - PLoS …, 2018 - journals.plos.org
Cattle and other ruminants produce large quantities of methane (~ 110 million metric tonnes
per annum), which is a potent greenhouse gas affecting global climate change. Methane …

Diet shapes the gut microbiome of pigs during nursing and weaning

SA Frese, K Parker, CC Calvert, DA Mills - Microbiome, 2015 - Springer
Background The newborn mammal is rapidly colonized by a complex microbial community,
whose importance for host health is becoming increasingly clear. Understanding the forces …

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota

J Wang, LB Thingholm, J Skiecevičienė, P Rausch… - Nature …, 2016 - nature.com
Human gut microbiota is an important determinant for health and disease, and recent
studies emphasize the numerous factors shaping its diversity. Here we performed a genome …