Systematic benchmarking of statistical methods to assess differential expression of circular RNAs
Circular RNAs (circRNAs) are covalently closed transcripts involved in critical regulatory
axes, cancer pathways and disease mechanisms. CircRNA expression measured with RNA …
axes, cancer pathways and disease mechanisms. CircRNA expression measured with RNA …
Functional long non-coding and circular RNAs in zebrafish
The utility of model organisms to understand the function of a novel transcript/genes has
allowed us to delineate their molecular mechanisms in maintaining cellular homeostasis …
allowed us to delineate their molecular mechanisms in maintaining cellular homeostasis …
Developmental programming: prenatal testosterone excess on liver and muscle coding and noncoding RNA in female sheep
N Saadat, M Puttabyatappa, VR Elangovan… - …, 2022 - academic.oup.com
Prenatal testosterone (T)-treated female sheep manifest peripheral insulin resistance,
ectopic lipid accumulation, and insulin signaling disruption in liver and muscle. This study …
ectopic lipid accumulation, and insulin signaling disruption in liver and muscle. This study …
Genome-wide identification and analysis of the methylation of lncRNAs and prognostic implications in the glioma
Y He, L Wang, J Tang, Z Han - Frontiers in Oncology, 2021 - frontiersin.org
Glioma is characterized by rapid cell proliferation and extensive infiltration among brain
tissues, but the molecular pathology has been still poorly understood. Previous studies …
tissues, but the molecular pathology has been still poorly understood. Previous studies …
Skeletal muscle lncRNA profile associated with fatty acids in beef cattle
This study aimed to identify differentially expressed (DE) long non-coding RNAs (lncRNAs)
in muscle tissue of Nellore cattle clustered by their fatty acid profile. Longissimus thoracis …
in muscle tissue of Nellore cattle clustered by their fatty acid profile. Longissimus thoracis …
[PDF][PDF] Systematic benchmarking of bulk and single-cell RNA-seq statistical methods to assess differential expression of circular RNAs
Abstract Background Circular RNAs (circRNAs) are transcripts with covalently joined 3'and
5'ends. They play critical regulatory roles, are involved in disease and cancer mechanisms …
5'ends. They play critical regulatory roles, are involved in disease and cancer mechanisms …
lncRNA Mediated Hijacking of T-cell Hypoxia Response Pathway by Mycobacterium tuberculosis Predicts Latent to Active Progression in Humans
J Mehra, V Kumar, P Srivastava, T Sethi - bioRxiv, 2020 - biorxiv.org
Cytosolic functions of Long non-coding RNAs including mRNA translation masking and
sponging are major regulators of biological pathways. Formation of T cell-bounded hypoxic …
sponging are major regulators of biological pathways. Formation of T cell-bounded hypoxic …
Statistical methods for testing differential gene expression in bulk and single-cell RNA sequencing data
AT Assefa - 2020 - biblio.ugent.be
The transcriptome is the complete set of RNA molecules in biological samples, and they are
primarily invariant in different tissues and cells of the same individual. Studying the …
primarily invariant in different tissues and cells of the same individual. Studying the …
[HTML][HTML] Gene coexpression networks reveal a broad role for lncRNAs in inflammatory bowel disease
JL Johnson, D Sargsyan, EM Neiman, A Hart… - JCI insight, 2024 - ncbi.nlm.nih.gov
The role of long noncoding RNAs (lncRNAs) in disease is incompletely understood, but their
regulation of inflammation is increasingly appreciated. We addressed the extent of lncRNA …
regulation of inflammation is increasingly appreciated. We addressed the extent of lncRNA …