[HTML][HTML] A faecal microbiota signature with high specificity for pancreatic cancer
Background Recent evidence suggests a role for the microbiome in pancreatic ductal
adenocarcinoma (PDAC) aetiology and progression. Objective To explore the faecal and …
adenocarcinoma (PDAC) aetiology and progression. Objective To explore the faecal and …
Combinatorial, additive and dose-dependent drug–microbiome associations
SK Forslund, R Chakaroun… - Nature, 2021 - nature.com
During the transition from a healthy state to cardiometabolic disease, patients become
heavily medicated, which leads to an increasingly aberrant gut microbiome and serum …
heavily medicated, which leads to an increasingly aberrant gut microbiome and serum …
Towards the biogeography of prokaryotic genes
Microbial genes encode the majority of the functional repertoire of life on earth. However,
despite increasing efforts in metagenomic sequencing of various habitats,–, little is known …
despite increasing efforts in metagenomic sequencing of various habitats,–, little is known …
Drivers and determinants of strain dynamics following fecal microbiota transplantation
Fecal microbiota transplantation (FMT) is a therapeutic intervention for inflammatory
diseases of the gastrointestinal tract, but its clinical mode of action and subsequent …
diseases of the gastrointestinal tract, but its clinical mode of action and subsequent …
A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments
Metagenomic binning is the step in building metagenome-assembled genomes (MAGs)
when sequences predicted to originate from the same genome are automatically grouped …
when sequences predicted to originate from the same genome are automatically grouped …
Extensive transmission of microbes along the gastrointestinal tract
The gastrointestinal tract is abundantly colonized by microbes, yet the translocation of oral
species to the intestine is considered a rare aberrant event, and a hallmark of disease. By …
species to the intestine is considered a rare aberrant event, and a hallmark of disease. By …
<? mode longmeta?> SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Meta'omic data on microbial diversity and function accrue exponentially in public
repositories, but derived information is often siloed according to data type, study or sampled …
repositories, but derived information is often siloed according to data type, study or sampled …
Recent advances of machine learning applications in human gut microbiota study: from observational analysis toward causal inference and clinical intervention
Highlights•ML facilitates the detection of disease-associated microbial features.•Open data
repository and tool development improves study reproducibility.•Recent methods integrate …
repository and tool development improves study reproducibility.•Recent methods integrate …
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
The human microbiome is increasingly mined for diagnostic and therapeutic biomarkers
using machine learning (ML). However, metagenomics-specific software is scarce, and …
using machine learning (ML). However, metagenomics-specific software is scarce, and …
Gut microbiome and atrial fibrillation—results from a large population-based study
Background Atrial fibrillation (AF) is an important heart rhythm disorder in aging populations.
The gut microbiome composition has been previously related to cardiovascular disease risk …
The gut microbiome composition has been previously related to cardiovascular disease risk …