[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
Global observing needs in the deep ocean
The deep ocean below 200 m water depth is the least observed, but largest habitat on our
planet by volume and area. Over 150 years of exploration has revealed that this dynamic …
planet by volume and area. Over 150 years of exploration has revealed that this dynamic …
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on
Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic …
Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic …
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
Protist metabarcoding and environmental biomonitoring: time for change
J Pawlowski, F Lejzerowicz… - European Journal of …, 2016 - Elsevier
High-throughput amplicon sequencing of environmental DNA and/or RNA proved to be a
powerful tool to describe protist diversity. This new approach called also the metabarcoding …
powerful tool to describe protist diversity. This new approach called also the metabarcoding …
Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform
Illumina's MiSeq has become the dominant platform for gene amplicon sequencing in
microbial ecology studies; however, various technical concerns, such as reproducibility, still …
microbial ecology studies; however, various technical concerns, such as reproducibility, still …
[HTML][HTML] Climate forcing of regional deep-sea biodiversity documented by benthic foraminifera
The biodiversity of deep-sea ecosystems is closely linked to orbital and suborbital climate
changes during the late Quaternary as documented by the diversity and species …
changes during the late Quaternary as documented by the diversity and species …
Functional traits and spatio-temporal structure of a major group of soil protists (Rhizaria: Cercozoa) in a temperate grassland
AM Fiore-Donno, T Richter-Heitmann… - Frontiers in …, 2019 - frontiersin.org
Soil protists are increasingly appreciated as essential components of soil foodwebs;
however, there is a dearth of information on the factors structuring their communities. Here …
however, there is a dearth of information on the factors structuring their communities. Here …
Eukaryotic biodiversity and spatial patterns in the Clarion-Clipperton Zone and other abyssal regions: Insights from sediment DNA and RNA metabarcoding
F Lejzerowicz, AJ Gooday… - Frontiers in Marine …, 2021 - frontiersin.org
The abyssal seafloor is a mosaic of highly diverse habitats that represent the least known
marine ecosystems on Earth. Some regions enriched in natural resources, such as …
marine ecosystems on Earth. Some regions enriched in natural resources, such as …
Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone
The deep seafloor serves as a reservoir of biodiversity in the global ocean, with> 80% of
invertebrates at abyssal depths still undescribed. These diverse and remote deep‐sea …
invertebrates at abyssal depths still undescribed. These diverse and remote deep‐sea …