Current challenges and best-practice protocols for microbiome analysis

R Bharti, DG Grimm - Briefings in bioinformatics, 2021 - academic.oup.com
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …

Analysis of the gut microbiome in dogs and cats

JS Suchodolski - Veterinary Clinical Pathology, 2022 - Wiley Online Library
The gut microbiome is an important immune and metabolic organ. Intestinal bacteria
produce various metabolites that influence the health of the intestine and other organ …

Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data

J Chong, P Liu, G Zhou, J Xia - Nature protocols, 2020 - nature.com
MicrobiomeAnalyst is an easy-to-use, web-based platform for comprehensive analysis of
common data outputs generated from current microbiome studies. It enables researchers …

A catalogue of 1,167 genomes from the human gut archaeome

CM Chibani, A Mahnert, G Borrel, A Almeida… - Nature …, 2022 - nature.com
The human gut microbiome plays an important role in health, but its archaeal diversity
remains largely unexplored. In the present study, we report the analysis of 1,167 …

Dysbiosis of maternal and neonatal microbiota associated with gestational diabetes mellitus

J Wang, J Zheng, W Shi, N Du, X Xu, Y Zhang, P Ji… - Gut, 2018 - gut.bmj.com
Objective The initial colonisation of the human microbiota and the impact of maternal health
on neonatal microbiota at birth remain largely unknown. The aim of our study is to …

Low dietary fiber intake increases Collinsella abundance in the gut microbiota of overweight and obese pregnant women

LF Gomez-Arango, HL Barrett, SA Wilkinson… - Gut …, 2018 - Taylor & Francis
The gut microbiota contributes to the regulation of glucose metabolism in pregnancy.
Abundance of the genus Collinsella is positively correlated with circulating insulin; however …

Intestinal flora modulates blood pressure by regulating the synthesis of intestinal-derived corticosterone in high salt-induced hypertension

X Yan, J Jin, X Su, X Yin, J Gao, X Wang… - Circulation …, 2020 - Am Heart Assoc
Rationale: High-salt diet is one of the most important risk factors for hypertension. Intestinal
flora has been reported to be associated with high salt–induced hypertension (hSIH) …

Probiotics drive gut microbiome triggering emotional brain signatures

D Bagga, JL Reichert, K Koschutnig, CS Aigner… - Gut …, 2018 - Taylor & Francis
Experimental manipulation of the gut microbiome was found to modify emotional and
cognitive behavior, neurotransmitter expression and brain function in rodents, but …

Replacing fishmeal with plant protein in Atlantic salmon (Salmo salar) diets by supplementation with fish protein hydrolysate

S Egerton, A Wan, K Murphy, F Collins, G Ahern… - Scientific reports, 2020 - nature.com
The effects of feeding an 80% plant protein diet, with and without fish protein hydrolysate
(FPH) supplementation, on the growth and gut health of Atlantic salmon were investigated …

The role of the cervicovaginal microbiome on the genesis and as a biomarker of premalignant cervical intraepithelial neoplasia and invasive cervical cancer

G Curty, PS de Carvalho, MA Soares - International journal of molecular …, 2019 - mdpi.com
The microbiome is able to modulate immune responses, alter the physiology of the human
organism, and increase the risk of viral infections and development of diseases such as …