Lone pair− aromatic interactions: To stabilize or not to stabilize

M Egli, S Sarkhel - Accounts of chemical research, 2007 - ACS Publications
The ability of aromatic rings to act as acceptors in hydrogen bonds has been demonstrated
extensively both by experimental and by theoretical means. Countless examples of D …

Specific noncovalent interactions at protein-ligand interface: implications for rational drug design

P Zhou, J Huang, F Tian - Current medicinal chemistry, 2012 - ingentaconnect.com
Specific noncovalent interactions that are indicative of attractive, directional intermolecular
forces have always been of key interest to medicinal chemists in their search for the “glue” …

Insights into the strength and origin of halogen bonding: the halobenzene− formaldehyde dimer

KE Riley, KM Merz - The Journal of Physical Chemistry A, 2007 - ACS Publications
The observation of short halogen− carbonyl oxygen interactions in protein− ligand
complexes has spurred us to use computational tools to better understand the strength of …

Small-molecule inhibitors prevent the genotoxic and protumoural effects induced by colibactin-producing bacteria

A Cougnoux, J Delmas, L Gibold, T Faïs, C Romagnoli… - Gut, 2016 - gut.bmj.com
Objective Colorectal cancers (CRCs) are frequently colonised by colibactin toxin-producing
Escherichia coli bacteria that induce DNA damage in host cells and exhibit protumoural …

Rationalizing tight ligand binding through cooperative interaction networks

B Kuhn, JE Fuchs, M Reutlinger, M Stahl… - Journal of chemical …, 2011 - ACS Publications
Small modifications of the molecular structure of a ligand sometimes cause strong gains in
binding affinity to a protein target, rendering a weakly active chemical series suddenly …

Efficient stacking on protein amide fragments

M Harder, B Kuhn, F Diederich - ChemMedChem, 2013 - Wiley Online Library
The less polar π‐surface of protein amide groups is exposed in many receptor binding sites,
either as part of the backbone or in Gln/Asn side chains. Using quantum chemical …

The Protein Data Bank (PDB), its related services and software tools as key components for in silico guided drug discovery

J Kirchmair, P Markt, S Distinto… - Journal of medicinal …, 2008 - ACS Publications
In 1970, at a time when structural information of one atom was stored on a single punched
card, the crystallographers Helen M. Berman, Edgar Meyer, and Gerson Cohen began …

Inhibition of the Cysteine Protease Human Cathepsin L by Triazine Nitriles: Amide⋅⋅⋅ Heteroarene π‐Stacking Interactions and Chalcogen Bonding in the S3 Pocket

M Giroud, J Ivkovic, M Martignoni, M Fleuti… - …, 2017 - Wiley Online Library
We report an extensive “heteroarene scan” of triazine nitrile ligands of the cysteine protease
human cathepsin L (hCatL) to investigate π‐stacking on the peptide amide bond Gly67 …

Gold⋯ π aryl interactions as supramolecular synthons

ERT Tiekink, J Zukerman-Schpector - CrystEngComm, 2009 - pubs.rsc.org
Au⋯ π interactions whereby the electron-rich π-system of C6-aromatic rings interact with
gold are shown to exist in the crystal structures of both gold (I) and gold (III) complexes, and …

Optimization of Triazine Nitriles as Rhodesain Inhibitors: Structure–Activity Relationships, Bioisosteric Imidazopyridine Nitriles, and X‐ray Crystal Structure Analysis …

V Ehmke, E Winkler, DW Banner, W Haap… - …, 2013 - Wiley Online Library
The cysteine protease rhodesain of Trypanosoma brucei parasites causing African sleeping
sickness has emerged as a target for the development of new drug candidates. Based on a …