Artificial intelligence–enabled virtual screening of ultra-large chemical libraries with deep docking

F Gentile, JC Yaacoub, J Gleave, M Fernandez… - Nature …, 2022 - nature.com
With the recent explosion of chemical libraries beyond a billion molecules, more efficient
virtual screening approaches are needed. The Deep Docking (DD) platform enables up to …

Plant Derived Bioactive Compounds, Their Anti-Cancer Effects and In Silico Approaches as an Alternative Target Treatment Strategy for Breast Cancer: An Updated …

V Shrihastini, P Muthuramalingam, S Adarshan… - Cancers, 2021 - mdpi.com
Simple Summary Breast cancer is one of the leading causes of death among women
worldwide. Breast cancer may be provoked due to several physical, chemical and …

Learning from Safe-by-Design for Safe-and-Sustainable-by-Design: Mapping the current landscape of Safe-by-Design reviews, case studies, and frameworks

A Sudheshwar, C Apel, K Kümmerer, Z Wang… - Environment …, 2024 - Elsevier
With the introduction of the European Commission's “Safe and Sustainable-by-
Design”(SSbD) framework, the interest in understanding the implications of safety and …

Diversity and chemical space characterization of inhibitors of the epigenetic target G9a: A chemoinformatics approach

R Cedillo-González, JL Medina-Franco - ACS omega, 2023 - ACS Publications
G9a is a histone-lysine methyltransferase that performs the mono-and dimethylation of
lysine 9 at histone 3 of the nucleosome. It belongs to the SET PKMT family, and its …

Recent trends in pharmaceutical analysis to foster modern drug discovery by comparative in-silico profiling of drugs and related substances

SB Ganorkar, Y Vander Heyden - TrAC Trends in Analytical Chemistry, 2022 - Elsevier
Pharmaceutical drug analysis (PDA), besides quantifying drugs and related substances
(RS), can enrich drug discovery (DD) by suggesting new leads. PDA may be extended …

[HTML][HTML] Omics technologies to understand drug toxicity mechanisms

N Nguyen, D Jennen, J Kleinjans - Drug Discovery Today, 2022 - Elsevier
Highlights•High throughput technologies (HTPs) provide quantitative and multi-dimensional
omics data.•Available HTPs can capture biological alterations in DNA, RNA, protein, and …

Consensus docking aid to model the activity of an inhibitor of DNA methyltransferase 1 inspired by de novo design

DL Prado-Romero, A Gómez-García… - Frontiers in Drug …, 2023 - frontiersin.org
The structure-activity relationships data available in public databases of inhibitors of DNA
methyltransferases (DNMTs), families of epigenetic targets, plus the structural information of …

Chemoinformatic characterization of synthetic screening libraries focused on epigenetic targets

EA Flores‐Padilla, KE Juárez‐Mercado… - Molecular …, 2022 - Wiley Online Library
The importance of epigenetic drug and probe discovery is on the rise. This is not only
paramount to identify and develop therapeutic treatments associated with epigenetic …

Epigenetic target fishing with accurate machine learning models

N Sanchez-Cruz, JL Medina-Franco - Journal of Medicinal …, 2021 - ACS Publications
Epigenetic targets are of significant importance in drug discovery research, as demonstrated
by the eight approved epigenetic drugs for treatment of cancer and the increasing …

Design, synthesis, and biological evaluation of lysine demethylase 5 C degraders

T Iida, Y Itoh, Y Takahashi, Y Yamashita… - …, 2021 - Wiley Online Library
Abstract Lysine demethylase 5 C (KDM5C) controls epigenetic gene expression and is
attracting great interest in the field of chemical epigenetics. KDM5C has emerged as a …