CARE: context-aware sequencing read error correction

F Kallenborn, A Hildebrandt, B Schmidt - Bioinformatics, 2021 - academic.oup.com
Motivation Error correction is a fundamental pre-processing step in many Next-Generation
Sequencing (NGS) pipelines, in particular for de novo genome assembly. However, existing …

[HTML][HTML] BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction

RR Expósito, J González-Domínguez - Future Generation Computer …, 2024 - Elsevier
Despite the significant improvements in both throughput and cost provided by modern Next-
Generation Sequencing (NGS) platforms, sequencing errors in NGS datasets can still …

 SparkEC: speeding up alignment-based DNA error correction tools

RR Expósito, M Martínez-Sánchez, J Touriño - BMC bioinformatics, 2022 - Springer
Background In recent years, huge improvements have been made in the context of
sequencing genomic data under what is called Next Generation Sequencing (NGS) …

SeQual: big data tool to perform quality control and data preprocessing of large NGS datasets

RR Expósito, R Galego-Torreiro… - IEEE …, 2020 - ieeexplore.ieee.org
This paper presents SeQual, a scalable tool to efficiently perform quality control of large
genomic datasets. Our tool currently supports more than 30 different operations (eg, filtering …

Automated approach for accurate CPU power modelling

T Maseda, J Enes, RR Expósito… - 2024 IEEE International …, 2024 - ieeexplore.ieee.org
Power supply is a limiting factor when increasing the computing capacity of supercomputers.
As a consequence, power consumption has become one of the biggest challenges in the …

Research on Public Management Application Innovation Based on Spark Big Data Framework

Z Liu - Mathematical Problems in Engineering, 2022 - Wiley Online Library
Public management service is the key to urban intelligent construction. This paper proposes
an analysis method and model based on Spark big data framework and takes resident …

Inclusive Educational Review of Software Architectural Styles and Patterns for the Students of the College of Information and Computing Sciences of Cagayan State …

L Padirayon, FP Masuli, MS Alipio, DT Ursulum… - JETT, 2023 - dialnet.unirioja.es
A good architectural design has a high contribution to the success of a system. In addition,
this architectural design is useful for the Information Technology (IT) students as their basis …

Inclusive Educational Review of Software Architectural Styles and Patterns for the Students of the College of Information and Computing Sciences of Cagayan State …

FP Masuli, LM Padirayon, MS Alipio, DT Ursulum… - 2023 - digibug.ugr.es
A good architectural design has a high contribution to the success of a system. In addition,
this architectural design is useful for the Information Technology (IT) students as their basis …

DNA based service data security in cloud computing environment

A Patel, Z Ge, I Seher - 2021 6th International Conference on …, 2021 - ieeexplore.ieee.org
Cloud computing is the type of technology preferred to maintain computing power, computer
resources, and majorly used to handle the cloud storage process. Also, it helps to manage …

New Parallel and Distributed Tools and Algorithms for Life Sciences

J Carretero, D Krefting - Future Generation Computer Systems, 2020 - Elsevier
Computational methods are nowadays ubiquitous in the field of bioinformatics and
biomedicine. Besides established fields like molecular dynamics, genomics or …