Chromatin regulatory mechanisms and therapeutic opportunities in cancer

AM Valencia, C Kadoch - Nature cell biology, 2019 - nature.com
Research over the past several decades has unmasked a major contribution of disrupted
chromatin regulatory processes to human disease, particularly cancer. Advances in genome …

From profiles to function in epigenomics

SH Stricker, A Köferle, S Beck - Nature Reviews Genetics, 2017 - nature.com
Myriads of epigenomic features have been comprehensively profiled in health and disease
across cell types, tissues and individuals. Although current epigenomic approaches can …

Landscape of mSWI/SNF chromatin remodeling complex perturbations in neurodevelopmental disorders

AM Valencia, A Sankar, PJ van der Sluijs… - Nature Genetics, 2023 - nature.com
DNA sequencing-based studies of neurodevelopmental disorders (NDDs) have identified a
wide range of genetic determinants. However, a comprehensive analysis of these data, in …

[HTML][HTML] Large-scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism

FK Satterstrom, JA Kosmicki, J Wang, MS Breen… - Cell, 2020 - cell.com
We present the largest exome sequencing study of autism spectrum disorder (ASD) to date
(n= 35,584 total samples, 11,986 with ASD). Using an enhanced analytical framework to …

Synaptic, transcriptional and chromatin genes disrupted in autism

S De Rubeis, X He, AP Goldberg, CS Poultney… - Nature, 2014 - nature.com
The genetic architecture of autism spectrum disorder involves the interplay of common and
rare variants and their impact on hundreds of genes. Using exome sequencing, here we …

[HTML][HTML] Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo

MA Ricci, C Manzo, MF García-Parajo, M Lakadamyali… - Cell, 2015 - cell.com
Nucleosomes help structure chromosomes by compacting DNA into fibers. To gain insight
into how nucleosomes are arranged in vivo, we combined quantitative super-resolution …

The landscape of somatic mutations in epigenetic regulators across 1,000 paediatric cancer genomes

R Huether, L Dong, X Chen, G Wu, M Parker… - Nature …, 2014 - nature.com
Studies of paediatric cancers have shown a high frequency of mutation across epigenetic
regulators. Here we sequence 633 genes, encoding the majority of known epigenetic …

EpiFactors: a comprehensive database of human epigenetic factors and complexes

YA Medvedeva, A Lennartsson, R Ehsani… - Database, 2015 - academic.oup.com
Epigenetics refers to stable and long-term alterations of cellular traits that are not caused by
changes in the DNA sequence per se. Rather, covalent modifications of DNA and histones …

Histone variant H2A. J accumulates in senescent cells and promotes inflammatory gene expression

K Contrepois, C Coudereau, BA Benayoun… - Nature …, 2017 - nature.com
The senescence of mammalian cells is characterized by a proliferative arrest in response to
stress and the expression of an inflammatory phenotype. Here we show that histone H2A. J …

Integrative proteomic profiling reveals PRC2-dependent epigenetic crosstalk maintains ground-state pluripotency

G van Mierlo, RAM Dirks, L De Clerck, AB Brinkman… - Cell stem cell, 2019 - cell.com
The pluripotent ground state is defined as a basal state free of epigenetic restrictions, which
influence lineage specification. While naive embryonic stem cells (ESCs) can be maintained …