Genetic impacts on DNA methylation: research findings and future perspectives

S Villicaña, JT Bell - Genome biology, 2021 - Springer
Multiple recent studies highlight that genetic variants can have strong impacts on a
significant proportion of the human DNA methylome. Methylation quantitative trait loci, or …

The role of regulatory variation in complex traits and disease

FW Albert, L Kruglyak - Nature Reviews Genetics, 2015 - nature.com
We are in a phase of unprecedented progress in identifying genetic loci that cause variation
in traits ranging from growth and fitness in simple organisms to disease in humans …

Detecting epistasis in human complex traits

WH Wei, G Hemani, CS Haley - Nature Reviews Genetics, 2014 - nature.com
Genome-wide association studies (GWASs) have become the focus of the statistical analysis
of complex traits in humans, successfully shedding light on several aspects of genetic …

Tensor decomposition for multiple-tissue gene expression experiments

V Hore, A Vinuela, A Buil, J Knight, MI McCarthy… - Nature …, 2016 - nature.com
Genome-wide association studies of gene expression traits and other cellular phenotypes
have successfully identified links between genetic variation and biological processes. The …

Current challenges and new opportunities for gene-environment interaction studies of complex diseases

K McAllister, LE Mechanic, C Amos… - American journal of …, 2017 - academic.oup.com
Recently, many new approaches, study designs, and statistical and analytical methods have
emerged for studying gene-environment interactions (G× Es) in large-scale studies of …

Genetics of trans-regulatory variation in gene expression

FW Albert, JS Bloom, J Siegel, L Day, L Kruglyak - Elife, 2018 - elifesciences.org
Heritable variation in gene expression forms a crucial bridge between genomic variation
and the biology of many traits. However, most expression quantitative trait loci (eQTLs) …

Smoking induces coordinated DNA methylation and gene expression changes in adipose tissue with consequences for metabolic health

PC Tsai, CA Glastonbury, MN Eliot, S Bollepalli, I Yet… - Clinical …, 2018 - Springer
Background Tobacco smoking is a risk factor for multiple diseases, including cardiovascular
disease and diabetes. Many smoking-associated signals have been detected in the blood …

A linear mixed-model approach to study multivariate gene–environment interactions

R Moore, FP Casale, M Jan Bonder, D Horta… - Nature …, 2019 - nature.com
Different exposures, including diet, physical activity, or external conditions can contribute to
genotype–environment interactions (G× E). Although high-dimensional environmental data …

Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize

TA Schrag, M Westhues, W Schipprack, F Seifert… - Genetics, 2018 - academic.oup.com
The ability to predict the agronomic performance of single-crosses with high precision is
essential for selecting superior candidates for hybrid breeding. With recent technological …

Influence of gene interaction on complex trait variation with multilocus models

A Mäki-Tanila, WG Hill - Genetics, 2014 - academic.oup.com
Although research effort is being expended into determining the importance of epistasis and
epistatic variance for complex traits, there is considerable controversy about their …