[HTML][HTML] Implementing cell-free DNA of pancreatic cancer patient–derived organoids for personalized oncology

Z Dantes, HY Yen, N Pfarr, C Winter, K Steiger… - Jci Insight, 2020 - ncbi.nlm.nih.gov
One of the major challenges in using pancreatic cancer patient–derived organoids (PDOs)
in precision oncology is the time from biopsy to functional characterization. This is …

[HTML][HTML] Deriving tumor purity from cancer next generation sequencing data: applications for quantitative ERBB2 (HER2) copy number analysis and germline inference …

SE Siegmund, DK Manning, PK Davineni, F Dong - Modern Pathology, 2022 - Elsevier
Tumor purity, or the relative contribution of tumor cells out of all cells in a pathological
specimen, influences mutation identification and clinical interpretation of cancer panel next …

International Harmonization of Provisional Diagnostic Criteria for ERBB2-Amplified Metastatic Colorectal Cancer Allowing for Screening by Next-Generation …

S Fujii, AM Magliocco, J Kim, W Okamoto… - JCO Precision …, 2020 - ascopubs.org
PURPOSE ERBB2 amplification (human epidermal growth factor receptor 2 positivity
[HER2+]) in metastatic colorectal cancer (mCRC) has important therapeutic implications that …

Evaluation of next generation sequencing for detecting HER2 copy number in breast and gastric cancers

D Niu, L Li, Y Yu, W Zang, Z Li, L Zhou, L Jia… - Pathology & Oncology …, 2020 - Springer
Amplicon-based next generation sequencing (NGS) approaches have been preferentially
adopted by the clinical laboratories on the basis of a short turnaround time (TAT) and small …

Supporting biomarker-driven therapies in oncology: a genomic testing cost calculator

A Stenzinger, B Cuffel, N Paracha, E Vail… - The …, 2023 - academic.oup.com
Background Adoption of high-throughput, gene panel-based, next-generation sequencing
(NGS) into routine cancer care is widely supported, but hampered by concerns about cost …

Circulating tumor cell plasticity determines breast cancer therapy resistance via neuregulin 1–HER3 signaling

R Würth, E Donato, LL Michel, M Saini, L Becker… - Nature Cancer, 2025 - nature.com
Circulating tumor cells (CTCs) drive metastasis, the leading cause of death in individuals
with breast cancer. Due to their low abundance in the circulation, robust CTC expansion …

Bridging genomics and phenomics of gastric carcinoma

J Cho, S Ahn, DS Son, NKD Kim… - … journal of cancer, 2019 - Wiley Online Library
Genetic alterations are the starting point leading to numerous changes in clinical and
pathologic features (phenotypes) of individual cancers; however, their inter‐relationships in …

Comprehensive routine diagnostic screening to identify predictive mutations, gene amplifications, and microsatellite instability in FFPE tumor material

EMP Steeghs, LI Kroeze, BBJ Tops, LC van Kempen… - BMC cancer, 2020 - Springer
Background Sensitive and reliable molecular diagnostics is needed to guide therapeutic
decisions for cancer patients. Although less material becomes available for testing, genetic …

mdm2 gene amplification is associated with luminal breast cancer progression in humanized PDX mice and a worse outcome of estrogen receptor positive disease

AK Wege, EM Rom‐Jurek, P Jank… - … Journal of Cancer, 2022 - Wiley Online Library
Estrogen receptor‐positive breast cancer is a highly prevalent but heterogeneous disease
among women. Advanced molecular stratification is required to enable individually most …

[HTML][HTML] Liquid biopsy-based technologies: a promising tool for biomarker identification in her2-low breast cancer patients for improved therapeutic outcomes

A d'Alessandro, AF Deaconu, S Mandolesi… - Journal of Cancer …, 2024 - oaepublish.com
The molecular classification of breast cancer plays a pivotal role in developing personalized
treatment strategies, with the aim of improving therapeutic outcomes. Despite significant …