[HTML][HTML] The bacterial pangenome as a new tool for analysing pathogenic bacteria

L Rouli, V Merhej, PE Fournier, D Raoult - New microbes and new …, 2015 - Elsevier
The bacterial pangenome was introduced in 2005 and, in recent years, has been the subject
of many studies. Thanks to progress in next-generation sequencing methods, the …

[HTML][HTML] Legume growth-promoting rhizobia: an overview on the Mesorhizobium genus

M Laranjo, A Alexandre, S Oliveira - Microbiological research, 2014 - Elsevier
The need for sustainable agricultural practices is revitalizing the interest in biological
nitrogen fixation and rhizobia-legumes symbioses, particularly those involving economically …

Engineering transkingdom signalling in plants to control gene expression in rhizosphere bacteria

BA Geddes, P Paramasivan, A Joffrin… - Nature …, 2019 - nature.com
The root microbiota is critical for agricultural yield, with growth-promoting bacteria able to
solubilise phosphate, produce plant growth hormones, antagonise pathogens and fix N2 …

micropan: an R-package for microbial pan-genomics

L Snipen, KH Liland - BMC bioinformatics, 2015 - Springer
Background A pan-genome is defined as the set of all unique gene families found in one or
more strains of a prokaryotic species. Due to the extensive within-species diversity in the …

CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes

M Galardini, EG Biondi, M Bazzicalupo… - Source code for biology …, 2011 - Springer
Recent developments in sequencing technologies have given the opportunity to sequence
many bacterial genomes with limited cost and labor, compared to previous techniques …

Comparative genomics of the core and accessory genomes of 48 Sinorhizobiumstrains comprising five genospecies

M Sugawara, B Epstein, BD Badgley, T Unno, L Xu… - Genome biology, 2013 - Springer
Background The sinorhizobia are amongst the most well studied members of nitrogen-fixing
root nodule bacteria and contribute substantial amounts of fixed nitrogen to the biosphere …

Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium

GC Dicenzo, M Tesi, T Pfau, A Mengoni… - Nature …, 2020 - nature.com
The mutualistic association between leguminous plants and endosymbiotic rhizobial
bacteria is a paradigmatic example of a symbiosis driven by metabolic exchanges. Here, we …

Widespread fitness alignment in the legume–rhizobium symbiosis

ML Friesen - New Phytologist, 2012 - Wiley Online Library
Although 'cheaters' potentially destabilize the legume–rhizobium mutualism, we lack a
comprehensive review of host–symbiont fitness correlations.• Studies measuring rhizobium …

Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium

JE Parkinson, S Baumgarten, CT Michell… - Genome Biology and …, 2016 - academic.oup.com
Reef-building corals depend on symbiotic mutualisms with photosynthetic dinoflagellates in
the genus Symbiodinium. This large microalgal group comprises many highly divergent …

Advances in host plant and rhizobium genomics to enhance symbiotic nitrogen fixation in grain legumes

SL Dwivedi, KL Sahrawat, HD Upadhyaya… - Advances in …, 2015 - Elsevier
Legumes form symbiotic relationship with root-nodule, rhizobia. The nitrogen (N 2) fixed by
legumes is a renewable source and of great importance to agriculture. Symbiotic nitrogen …