Realigning the LIGHT signaling network to control dysregulated inflammation

CF Ware, M Croft, GA Neil - Journal of Experimental Medicine, 2022 - rupress.org
Advances in understanding the physiologic functions of the tumor necrosis factor
superfamily (TNFSF) of ligands, receptors, and signaling networks are providing deeper …

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

The Tabula Sapiens Consortium*, RC Jones… - Science, 2022 - science.org
Molecular characterization of cell types using single-cell transcriptome sequencing is
revolutionizing cell biology and enabling new insights into the physiology of human organs …

The Tabula Sapiens: a single cell transcriptomic atlas of multiple organs from individual human donors

Tabula Sapiens Consortium, SR Quake - Biorxiv, 2021 - biorxiv.org
In recent years there has been tremendous progress towards deep molecular
characterization of cell types using single cell transcriptome sequencing. Here we report a …

Population-level integration of single-cell datasets enables multi-scale analysis across samples

C De Donno, S Hediyeh-Zadeh, AA Moinfar… - Nature …, 2023 - nature.com
The increasing generation of population-level single-cell atlases has the potential to link
sample metadata with cellular data. Constructing such references requires integration of …

A comprehensive platform for analyzing longitudinal multi-omics data

SV Vasaikar, AK Savage, Q Gong, E Swanson… - Nature …, 2023 - nature.com
Longitudinal bulk and single-cell omics data is increasingly generated for biological and
clinical research but is challenging to analyze due to its many intrinsic types of variations …

[HTML][HTML] Effects of ex vivo blood anticoagulation and preanalytical processing time on the proteome content of platelets

ST Yunga, AJ Gower, AR Melrose, MK Fitzgerald… - Journal of Thrombosis …, 2022 - Elsevier
Background Ex vivo assays of platelet function critically inform mechanistic and clinical
hematology studies, where effects of divergent blood processing methods on platelet …

Proteomics for biomarker discovery for diagnosis and prognosis of kidney transplantation rejection

LM Ramalhete, R Araújo, A Ferreira, CRC Calado - Proteomes, 2022 - mdpi.com
Renal transplantation is currently the treatment of choice for end-stage kidney disease,
enabling a quality of life superior to dialysis. Despite this, all transplanted patients are at risk …

Comparative analysis of methods to reduce activation signature gene expression in PBMCs

L Andriamboavonjy, A MacDonald, LK Hamilton… - Scientific Reports, 2023 - nature.com
Preserving the in vivo cell transcriptome is essential for accurate profiling, yet factors during
cell isolation including time ex vivo and temperature induce artifactual gene expression …

How can we use proteomics to learn more about platelets?

JE Aslan - Platelets, 2023 - Taylor & Francis
Proteomics tools provide a powerful means to identify, detect, and quantify protein-related
details in studies of platelet phenotype and function. Here, we consider how historical and …

Cross‐platform immunophenotyping of human peripheral blood mononuclear cells with four high‐dimensional flow cytometry panels

A Heubeck, A Savage, K Henderson, C Roll… - Cytometry Part …, 2023 - Wiley Online Library
Immunophenotyping using high dimensional flow cytometry is a central component of
human immune system multi‐omic studies. We present four high parameter flow cytometry …