Metagenomics: the next culture-independent game changer

JD Forbes, NC Knox, J Ronholm, F Pagotto… - Frontiers in …, 2017 - frontiersin.org
A trend towards the abandonment of obtaining pure culture isolates in frontline laboratories
is at a crossroads with the ability of public health agencies to perform their basic mandate of …

Presence and Persistence of Salmonella in Water: The Impact on Microbial Quality of Water and Food Safety

H Liu, CA Whitehouse, B Li - Frontiers in Public Health, 2018 - frontiersin.org
Salmonella ranks high among the pathogens causing foodborne disease outbreaks.
According to the Centers for Disease Control and Prevention, Salmonella contributed to …

Salmonella serotype determination utilizing high-throughput genome sequencing data

S Zhang, Y Yin, MB Jones, Z Zhang… - Journal of clinical …, 2015 - Am Soc Microbiol
Serotyping forms the basis of national and international surveillance networks for
Salmonella, one of the most prevalent foodborne pathogens worldwide (1–3). Public health …

[图书][B] Practical handbook of microbiology

LH Green, E Goldman - 2021 - books.google.com
Practical Handbook of Microbiology, 4th edition provides basic, clear and concise
knowledge and practical information about working with microorganisms. Useful to anyone …

Analysis of plant microbe interactions in the era of next generation sequencing technologies

C Knief - Frontiers in plant science, 2014 - frontiersin.org
Next generation sequencing (NGS) technologies have impressively accelerated research in
biological science during the last years by enabling the production of large volumes of …

[HTML][HTML] Use of whole genome sequencing by the federal interagency collaboration for genomics for food and feed safety in the United States

EL Stevens, HA Carleton, J Beal, GE Tillman… - Journal of food …, 2022 - Elsevier
This multiagency report developed by the Interagency Collaboration for Genomics for Food
and Feed Safety provides an overview of the use of and transition to whole genome …

Recent and emerging innovations in Salmonella detection: a food and environmental perspective

RL Bell, KG Jarvis, AR Ottesen… - Microbial …, 2016 - Wiley Online Library
Salmonella is a diverse genus of Gram‐negative bacilli and a major foodborne pathogen
responsible for more than a million illnesses annually in the United States alone. Rapid …

The present and future of whole genome sequencing (WGS) and whole metagenome sequencing (WMS) for surveillance of antimicrobial resistant microorganisms …

EA Oniciuc, E Likotrafiti, A Alvarez-Molina, M Prieto… - Genes, 2018 - mdpi.com
Antimicrobial resistance (AMR) surveillance is a critical step within risk assessment
schemes, as it is the basis for informing global strategies, monitoring the effectiveness of …

Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak

A Ottesen, P Ramachandran, E Reed, JR White… - BMC microbiology, 2016 - Springer
Background Microbiota that co-enrich during efforts to recover pathogens from foodborne
outbreaks interfere with efficient detection and recovery. Here, dynamics of co-enriching …

Public health impact of Salmonella spp. on raw poultry: Current concepts and future prospects in the United States

CA O'Bryan, SC Ricke, JA Marcy - Food Control, 2022 - Elsevier
Non typhoidal Salmonella spp. are among the leading causes of foodborne illness in the US
Some 20% of foodborne illnesses attributed to Salmonella can be associated with poultry …