Stochastic models of intracellular transport

PC Bressloff, JM Newby - Reviews of Modern Physics, 2013 - APS
The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a
major challenge in modeling intracellular transport is to analyze stochastic processes within …

Stochastic switching in biology: from genotype to phenotype

PC Bressloff - Journal of Physics A: Mathematical and …, 2017 - iopscience.iop.org
There has been a resurgence of interest in non-equilibrium stochastic processes in recent
years, driven in part by the observation that the number of molecules (genes, mRNA …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Waves in neural media

PC Bressloff - Lecture notes on mathematical modelling in the life …, 2014 - Springer
This is a book on mathematical neuroscience, in which the unifying theme is wavelike
phenomena at multiple spatial and temporal scales. There are already several excellent …

Deep learning of material transport in complex neurite networks

A Li, A Barati Farimani, YJ Zhang - Scientific reports, 2021 - nature.com
Neurons exhibit complex geometry in their branched networks of neurites which is essential
to the function of individual neuron but also brings challenges to transport a wide variety of …

Path integrals and large deviations in stochastic hybrid systems

PC Bressloff, JM Newby - Physical Review E, 2014 - APS
We construct a path-integral representation of solutions to a stochastic hybrid system,
consisting of one or more continuous variables evolving according to a piecewise …

Neural field model of binocular rivalry waves

PC Bressloff, PC Bressloff - Waves in Neural Media: From Single Neurons …, 2014 - Springer
In this chapter, neural field theory is used to model binocular rivalry waves. During binocular
rivalry, visual perception switches back and forth between different images presented to the …

Modeling material transport regulation and traffic jam in neurons using PDE-constrained optimization

A Li, YJ Zhang - Scientific Reports, 2022 - nature.com
The intracellular transport process plays an important role in delivering essential materials
throughout branched geometries of neurons for their survival and function. Many …

A dynamical system model of neurofilament transport in axons

G Craciun, A Brown, A Friedman - Journal of Theoretical Biology, 2005 - Elsevier
We develop a dynamical system model for the transport of neurofilaments in axons, inspired
by Brown's “stop-and-go” model for slow axonal transport. We use fast/slow time-scale …

Moment equations for a piecewise deterministic PDE

PC Bressloff, SD Lawley - Journal of Physics A: Mathematical …, 2015 - iopscience.iop.org
We analyze a piecewise deterministic PDE consisting of the diffusion equation on a finite
interval Ω with randomly switching boundary conditions and diffusion coefficient. We …