Statistical Mechanics of DNA Unzipping under Periodic Force:<? format?> Scaling Behavior of Hysteresis Loops

S Kumar, G Mishra - Physical review letters, 2013 - APS
A simple model of DNA based on two interacting polymers has been used to study the
unzipping of a double stranded DNA subjected to a periodic force. We propose a dynamical …

Hysteresis and nonequilibrium work theorem for DNA unzipping

R Kapri - Physical Review E—Statistical, Nonlinear, and Soft …, 2012 - APS
We study by using Monte Carlo simulations the hysteresis in unzipping and rezipping of a
double stranded DNA (dsDNA) by pulling its strands in opposite directions in the fixed force …

Scaling of hysteresis loop of interacting polymers under a periodic force

RK Mishra, G Mishra, D Giri, S Kumar - The Journal of chemical …, 2013 - pubs.aip.org
Using Langevin dynamics simulations, we study a simple model of interacting-polymer
under a periodic force. The extension curves strongly depend on the magnitude of the …

Path probability distribution of stochastic motion of non dissipative systems: a classical analog of Feynman factor of path integral

TL Lin, R Wang, WP Bi, A El Kaabouchi, C Pujos… - Chaos, Solitons & …, 2013 - Elsevier
We investigate, by numerical simulation, the path probability of non dissipative mechanical
systems undergoing stochastic motion. The aim is to search for the relationship between this …

Thermodynamic relations for DNA phase transitions

P Sadhukhan, SM Bhattacharjee - Indian Journal of Physics, 2014 - Springer
The force induced unzipping transition of a double stranded DNA is considered from a
purely thermodynamic point of view. This analysis provides us with a set of relations that can …

Unzipping DNA by a periodic force: Hysteresis loops, dynamical order parameter, correlations, and equilibrium curves

MS Kalyan, R Kapri - The Journal of chemical physics, 2019 - pubs.aip.org
The unzipping of a double stranded DNA whose ends are subjected to a time dependent
periodic force with frequency ω and amplitude G is studied using Monte Carlo simulations …

Efimov-like phase of a three-stranded DNA and the renormalization-group limit cycle

T Pal, P Sadhukhan, SM Bhattacharjee - Physical Review E, 2015 - APS
A three-stranded DNA with short range base pairings only is known to exhibit a classical
analog of the quantum Efimov effect, viz., a three-chain bound state at the two-chain melting …

A note on non-equilibrium work fluctuations and equilibrium free energies

MS Kalyan, GA Prasad, VSS Sastry… - Physica A: Statistical …, 2011 - Elsevier
We consider in this paper, a few important issues in non-equilibrium work fluctuations and
their relations to equilibrium free energies. First we show that the Jarzynski identity can be …

Path probability and an extension of least action principle to random motion

T Lin - 2013 - theses.hal.science
The present thesis is devoted to the study of path probability of random motion on the basis
of an extension of Hamiltonian/Lagrangian mechanics to stochastic dynamics. The path …

[PDF][PDF] DNA Physics Near Melting Point

T Pal - 2016 - hbni.ac.in
DNA is a bio-molecule found, without any known exception, in every cellular lifeform. In
biology the fundamental phase of reproduction is the cell-division. During cell division the …