Bioinformatics tools and databases to assess the pathogenicity of mitochondrial DNA variants in the field of next generation sequencing

C Bris, D Goudenege, V Desquiret-Dumas… - Frontiers in …, 2018 - frontiersin.org
The development of next generation sequencing (NGS) has greatly enhanced the diagnosis
of mitochondrial disorders, with a systematic analysis of the whole mitochondrial DNA …

Enhanced mitochondrial genome analysis: bioinformatic and long-read sequencing advances and their diagnostic implications

WL Macken, M Falabella, C Pizzamiglio… - Expert Review of …, 2023 - Taylor & Francis
ABSTRACT Introduction Primary mitochondrial diseases (PMDs) comprise a large and
heterogeneous group of genetic diseases that result from pathogenic variants in either …

Possible A2E mutagenic effects on RPE mitochondrial DNA from innovative RNA-seq bioinformatics pipeline

L Donato, C Scimone, S Alibrandi, A Pitruzzella… - Antioxidants, 2020 - mdpi.com
Mitochondria are subject to continuous oxidative stress stimuli that, over time, can impair
their genome and lead to several pathologies, like retinal degenerations. Our main purpose …

MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits

S Castellana, T Biagini, F Petrizzelli… - Nucleic acids …, 2021 - academic.oup.com
Numerous lines of evidence have shown that the interaction between the nuclear and
mitochondrial genomes ensures the efficient functioning of the OXPHOS complexes, with …

Deleterious mitochondrial DNA point mutations are overrepresented in Drosophila expressing a proofreading-defective DNA polymerase γ

CL Samstag, JG Hoekstra, CH Huang… - PLoS …, 2018 - journals.plos.org
Mitochondrial DNA (mtDNA) mutations cause severe maternally inherited syndromes and
the accumulation of somatic mtDNA mutations is implicated in aging and common diseases …

The genetic landscape of mitochondrial diseases in Spain: a nationwide call

M Bellusci, AJ Paredes-Fuentes, E Ruiz-Pesini… - Genes, 2021 - mdpi.com
The frequency of mitochondrial diseases (MD) has been scarcely documented, and only a
few studies have reported data in certain specific geographical areas. In this study, we …

MmisAT and MmisP: an efficient and accurate suite of variant analysis toolkit for primary mitochondrial diseases

S Huang, Z Wu, T Wang, R Yu, Z Song, H Wang - Human Genomics, 2023 - Springer
Recent advances in next-generation sequencing (NGS) technology have greatly
accelerated the need for efficient annotation to accurately interpret clinically relevant genetic …

Deep learning-based techniques for pre-training deep convolutional neural networks

H Gao, F Kai-How, SR PADIGEPATI - US Patent 10,540,591, 2020 - Google Patents
The technology disclosed includes systems and methods to reduce overfitting of neural
network-implemented models that process sequences of amino acids and accompanying …

Leber's hereditary optic neuropathy: a report on novel mtDNA pathogenic variants

L Peverelli, A Catania, S Marchet, P Ciasca… - Frontiers in …, 2021 - frontiersin.org
Leber's hereditary optic neuropathy (LHON) is due to missense point mutations affecting
mitochondrial DNA (mtDNA); 90% of cases harbor the m. 3460G> A, m. 11778G> A, and m …

Genetic alterations in mitochondrial DNA are complementary to nuclear DNA mutations in pheochromocytomas

M Tabebi, M Łysiak, RK Dutta, S Lomazzi, MV Turkina… - Cancers, 2022 - mdpi.com
Simple Summary Mitochondrial DNA (mtDNA) alterations have been reported to play
important roles in cancer development and metastasis. However, there is scarce information …