Computational approaches for network-based integrative multi-omics analysis

FE Agamah, JR Bayjanov, A Niehues… - Frontiers in Molecular …, 2022 - frontiersin.org
Advances in omics technologies allow for holistic studies into biological systems. These
studies rely on integrative data analysis techniques to obtain a comprehensive view of the …

Recent advances in deep learning for protein-protein interaction analysis: A comprehensive review

M Lee - Molecules, 2023 - mdpi.com
Deep learning, a potent branch of artificial intelligence, is steadily leaving its transformative
imprint across multiple disciplines. Within computational biology, it is expediting progress in …

Autoencoders and their applications in machine learning: a survey

K Berahmand, F Daneshfar, ES Salehi, Y Li… - Artificial Intelligence …, 2024 - Springer
Autoencoders have become a hot researched topic in unsupervised learning due to their
ability to learn data features and act as a dimensionality reduction method. With rapid …

Deep learning for missing value imputation of continuous data and the effect of data discretization

WC Lin, CF Tsai, JR Zhong - Knowledge-Based Systems, 2022 - Elsevier
Often real-world datasets are incomplete and contain some missing attribute values.
Furthermore, many data mining and machine learning techniques cannot directly handle …

[PDF][PDF] New insights into the research landscape on the application of artificial intelligence in sustainable smart cities: a bibliometric mapping and network analysis …

A Zaidi, SSM Ajibade, M Musa, FV Bekun - International Journal of Energy …, 2023 - zbw.eu
Humanity's quest for safe, resilient, and liveable cities has prompted research into the
application of computational tools in the design and development of sustainable smart cities …

Deep learning in single-cell analysis

D Molho, J Ding, W Tang, Z Li, H Wen, Y Wang… - ACM Transactions on …, 2024 - dl.acm.org
Single-cell technologies are revolutionizing the entire field of biology. The large volumes of
data generated by single-cell technologies are high dimensional, sparse, and …

Synthetic augmentation of cancer cell line multi-omic datasets using unsupervised deep learning

Z Cai, S Apolinário, AR Baião, C Pacini… - Nature …, 2024 - nature.com
Integrating diverse types of biological data is essential for a holistic understanding of cancer
biology, yet it remains challenging due to data heterogeneity, complexity, and sparsity …

ydata-profiling: Accelerating data-centric AI with high-quality data

F Clemente, GM Ribeiro, A Quemy, MS Santos… - Neurocomputing, 2023 - Elsevier
Abstract ydata-profiling is an open-source Python package for advanced exploratory data
analysis that enables users to generate data profiling reports in a simple, fast, and efficient …

Leveraging generative AI for urban digital twins: a scoping review on the autonomous generation of urban data, scenarios, designs, and 3D city models for smart city …

H Xu, F Omitaomu, S Sabri, S Zlatanova, X Li, Y Song - Urban Informatics, 2024 - Springer
The digital transformation of modern cities by integrating advanced information,
communication, and computing technologies has marked the epoch of data-driven smart city …

Discrete missing data imputation using multilayer perceptron and momentum gradient descent

H Pan, Z Ye, Q He, C Yan, J Yuan, X Lai, J Su, R Li - Sensors, 2022 - mdpi.com
Data are a strategic resource for industrial production, and an efficient data-mining process
will increase productivity. However, there exist many missing values in data collected in real …