The AP-1 transcriptional complex: Local switch or remote command?

F Bejjani, E Evanno, K Zibara, M Piechaczyk… - … et Biophysica Acta (BBA …, 2019 - Elsevier
The ubiquitous family of AP-1 dimeric transcription complexes is involved in virtually all
cellular and physiological functions. It is paramount for cells to reprogram gene expression …

[HTML][HTML] Mapping human epigenomes

CM Rivera, B Ren - Cell, 2013 - cell.com
As the second dimension to the genome, the epigenome contains key information specific to
every type of cells. Thousands of human epigenome maps have been produced in recent …

Genome-wide enhancer maps link risk variants to disease genes

J Nasser, DT Bergman, CP Fulco, P Guckelberger… - Nature, 2021 - nature.com
Genome-wide association studies (GWAS) have identified thousands of noncoding loci that
are associated with human diseases and complex traits, each of which could reveal insights …

Are drug targets with genetic support twice as likely to be approved? Revised estimates of the impact of genetic support for drug mechanisms on the probability of drug …

EA King, JW Davis, JF Degner - PLoS genetics, 2019 - journals.plos.org
Despite strong vetting for disease activity, only 10% of candidate new molecular entities in
early stage clinical trials are eventually approved. Analyzing historical pipeline data, Nelson …

Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels

A Tin, J Marten, VL Halperin Kuhns, Y Li, M Wuttke… - Nature …, 2019 - nature.com
Elevated serum urate levels cause gout and correlate with cardiometabolic diseases via
poorly understood mechanisms. We performed a trans-ancestry genome-wide association …

LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor

NC Sheffield, C Bock - Bioinformatics, 2016 - academic.oup.com
Genomic datasets are often interpreted in the context of large-scale reference databases.
One approach is to identify significantly overlapping gene sets, which works well for gene …

Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics

M Farlik, NC Sheffield, A Nuzzo, P Datlinger… - Cell reports, 2015 - cell.com
Methods for single-cell genome and transcriptome sequencing have contributed to our
understanding of cellular heterogeneity, whereas methods for single-cell epigenomics are …

High-resolution interrogation of functional elements in the noncoding genome

NE Sanjana, J Wright, K Zheng, O Shalem… - Science, 2016 - science.org
The noncoding genome affects gene regulation and disease, yet we lack tools for rapid
identification and manipulation of noncoding elements. We developed a CRISPR screen …

C2H2 zinc finger proteins greatly expand the human regulatory lexicon

HS Najafabadi, S Mnaimneh, FW Schmitges… - Nature …, 2015 - nature.com
Abstract Cys2-His2 zinc finger (C2H2-ZF) proteins represent the largest class of putative
human transcription factors. However, for most C2H2-ZF proteins it is unknown whether they …

New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk

Y Lu, FR Day, S Gustafsson, ML Buchkovich… - Nature …, 2016 - nature.com
To increase our understanding of the genetic basis of adiposity and its links to
cardiometabolic disease risk, we conducted a genome-wide association meta-analysis of …