Spatial transcriptomics drives a new era in plant research

R Yin, K Xia, X Xu - The Plant Journal, 2023 - Wiley Online Library
Spatial transcriptomics drives a new era in plant research - Yin - 2023 - The Plant Journal - Wiley
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[HTML][HTML] A new era for plant science: spatial single-cell transcriptomics

S Giacomello - Current opinion in plant biology, 2021 - Elsevier
To achieve a complete understanding of how organisms function, there is a need to study
their fundamental unit, the cell, in its spatial context. In recent years, we have seen fast …

Xylem parenchyma—role and relevance in wood functioning in trees

A Słupianek, A Dolzblasz, K Sokołowska - Plants, 2021 - mdpi.com
Woody plants are characterised by a highly complex vascular system, wherein the
secondary xylem (wood) is responsible for the axial transport of water and various …

Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures

D Shi, V Jouannet, J Agustí, V Kaul, V Levitsky… - The Plant …, 2021 - academic.oup.com
Genome-wide gene expression maps with a high spatial resolution have substantially
accelerated plant molecular science. However, the number of characterized tissues and …

Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays

S Giacomello, J Lundeberg - Nature Protocols, 2018 - nature.com
Elucidation of the complex processes involved in plant growth requires analysis of the
spatial gene expression patterns in all affected tissues. This protocol extension is an …

Ray parenchymal cells contribute to lignification of tracheids in developing xylem of Norway spruce

O Blokhina, T Laitinen, Y Hatakeyama… - Plant …, 2019 - academic.oup.com
A comparative transcriptomic study and a single-cell metabolome analysis were combined
to determine whether parenchymal ray cells contribute to the biosynthesis of monolignols in …

Cell‐type‐specific transcriptomics uncovers spatial regulatory networks in bioenergy sorghum stems

J Fu, B McKinley, B James, W Chrisler… - The Plant …, 2024 - Wiley Online Library
Bioenergy sorghum is a low‐input, drought‐resilient, deep‐rooting annual crop that has high
biomass yield potential enabling the sustainable production of biofuels, biopower, and …

Transcriptome profiling of laser-captured germ cells and functional characterization of zbtb40 during 17alpha-methyltestosterone-induced spermatogenesis in orange-spotted …

X Wu, Y Yang, C Zhong, Y Guo, S Li, H Lin, X Liu - BMC genomics, 2020 - Springer
Background Spermatogenesis is an intricate process regulated by a finely organized
network. The orange-spotted grouper (Epinephelus coioides) is a protogynous …

Laser microdissection of woody and suberized plant tissues for RNA-Seq analysis

RC Pires, A Ferro, T Capote, A Usié, B Correia… - Molecular …, 2023 - Springer
An accurate profile of gene expression at a cellular level can contribute to a better
understanding of biological processes and complexities involved in regulatory mechanism …

The cellulose–lignin balance mediated by auxin signal transduction affects the twisted growth of Yunnan pine trunk

Z Liu, J Li, C Gao, Y Miao, K Cui - Scientia Horticulturae, 2023 - Elsevier
Trunk twisting, a special phenomenon observed during plant growth, leads to remarkable
changes in plant phenotypic plasticity and adaptability. However, it is a debate whether the …