[HTML][HTML] Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global …
KM Ruppert, RJ Kline, MS Rahman - Global Ecology and Conservation, 2019 - Elsevier
Environmental DNA (eDNA) metabarcoding is a novel method of assessing biodiversity
wherein samples are taken from the environment via water, sediment or air from which DNA …
wherein samples are taken from the environment via water, sediment or air from which DNA …
Stochastic community assembly: does it matter in microbial ecology?
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …
[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
A social niche breadth score reveals niche range strategies of generalists and specialists
FAB von Meijenfeldt, P Hogeweg… - Nature Ecology & Evolution, 2023 - nature.com
Generalists can survive in many environments, whereas specialists are restricted to a single
environment. Although a classical concept in ecology, niche breadth has remained …
environment. Although a classical concept in ecology, niche breadth has remained …
Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring
RB Ghannam, SM Techtmann - Computational and Structural …, 2021 - Elsevier
Advances in nucleic acid sequencing technology have enabled expansion of our ability to
profile microbial diversity. These large datasets of taxonomic and functional diversity are key …
profile microbial diversity. These large datasets of taxonomic and functional diversity are key …
Using soil bacterial communities to predict physico-chemical variables and soil quality
Background Soil ecosystems consist of complex interactions between biological
communities and physico-chemical variables, all of which contribute to the overall quality of …
communities and physico-chemical variables, all of which contribute to the overall quality of …
A practical guide to methods controlling false discoveries in computational biology
Background In high-throughput studies, hundreds to millions of hypotheses are typically
tested. Statistical methods that control the false discovery rate (FDR) have emerged as …
tested. Statistical methods that control the false discovery rate (FDR) have emerged as …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
Global observing needs in the deep ocean
The deep ocean below 200 m water depth is the least observed, but largest habitat on our
planet by volume and area. Over 150 years of exploration has revealed that this dynamic …
planet by volume and area. Over 150 years of exploration has revealed that this dynamic …