Biological databases for human research

D Zou, L Ma, J Yu, Z Zhang - Genomics, proteomics and …, 2015 - academic.oup.com
The completion of the Human Genome Project lays a foundation for systematically studying
the human genome from evolutionary history to precision medicine against diseases. With …

Using phosphoproteomics data to understand cellular signaling: a comprehensive guide to bioinformatics resources

SR Savage, B Zhang - Clinical Proteomics, 2020 - Springer
Mass spectrometry-based phosphoproteomics is becoming an essential methodology for the
study of global cellular signaling. Numerous bioinformatics resources are available to …

Genomics and evolution of protein phosphatases

MJ Chen, JE Dixon, G Manning - Science signaling, 2017 - science.org
Protein phosphatases are the essential opposite to protein kinases; together, these enzymes
regulate all protein phosphorylation and most cellular processes. To better understand the …

Posttranslational protein modifications in plant metabolism

G Friso, KJ van Wijk - Plant physiology, 2015 - academic.oup.com
Posttranslational modifications (PTM s) of proteins greatly expand proteome diversity,
increase functionality, and allow for rapid responses, all at relatively low costs for the cell …

The 2012 nucleic acids research database issue and the online molecular biology database collection

MY Galperin, XM Fernández-Suarez - Nucleic acids research, 2012 - academic.oup.com
Abstract The 19th annual Database Issue of Nucleic Acids Research features descriptions of
92 new online databases covering various areas of molecular biology and 100 papers …

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs

KJ van Wijk, G Friso, D Walther, WX Schulze - The Plant Cell, 2014 - academic.oup.com
Protein (de) phosphorylation plays an important role in plants. To provide a robust
foundation for subcellular phosphorylation signaling network analysis and kinase-substrate …

The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification

M Zulawski, G Schulze, R Braginets, S Hartmann… - BMC genomics, 2014 - Springer
Background Protein kinases constitute a particularly large protein family in Arabidopsis with
important functions in cellular signal transduction networks. At the same time Arabidopsis is …

WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes

Y Xu, S Zhang, S Lin, Y Guo, W Deng… - Nucleic acids …, 2016 - academic.oup.com
In this work, we developed a database WERAM (http://weram. biocuckoo. org/) for histone
acetyltransferases, histone deacetylases, histone methyltransferases, histone demethylases …

Orthogonal Translation for Site-Specific Installation of Post-translational Modifications

Q Gan, C Fan - Chemical Reviews, 2024 - ACS Publications
Post-translational modifications (PTMs) endow proteins with new properties to respond to
environmental changes or growth needs. With the development of advanced proteomics …

Approaches to study phosphatases

S Fahs, P Lujan, M Köhn - ACS chemical biology, 2016 - ACS Publications
Phosphatases play key roles in normal physiology and diseases. Studying phosphatases
has been both essential and challenging, and the application of conventional genetic and …