Optical tweezers in single-molecule biophysics

CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …

RecA: regulation and mechanism of a molecular search engine

JC Bell, SC Kowalczykowski - Trends in biochemical sciences, 2016 - cell.com
Homologous recombination maintains genomic integrity by repairing broken chromosomes.
The broken chromosome is partially resected to produce single-stranded DNA (ssDNA) that …

Ionic strength-dependent persistence lengths of single-stranded RNA and DNA

H Chen, SP Meisburger, SA Pabit… - Proceedings of the …, 2012 - National Acad Sciences
Dynamic RNA molecules carry out essential processes in the cell including translation and
splicing. Base-pair interactions stabilize RNA into relatively rigid structures, while flexible …

Self-assembly of three-dimensional prestressed tensegrity structures from DNA

T Liedl, B Högberg, J Tytell, DE Ingber… - Nature …, 2010 - nature.com
Tensegrity, or tensional integrity, is a property of a structure indicating a reliance on a
balance between components that are either in pure compression or pure tension for …

[HTML][HTML] Single polymer dynamics for molecular rheology

CM Schroeder - Journal of Rheology, 2018 - pubs.aip.org
Single polymer dynamics offers a powerful approach to study molecular-level interactions
and dynamic microstructure in materials. Direct visualization of single polymer chains has …

50th Anniversary Perspective: Polymer ConformationA Pedagogical Review

ZG Wang - Macromolecules, 2017 - ACS Publications
The study of the conformation properties of macromolecules is at the heart of polymer
science. Essentially all physical properties of polymers are manifestations of the underlying …

Elastic properties and secondary structure formation of single-stranded DNA at monovalent and divalent salt conditions

A Bosco, J Camunas-Soler, F Ritort - Nucleic acids research, 2014 - academic.oup.com
Single-stranded DNA (ssDNA) plays a major role in several biological processes. It is
therefore of fundamental interest to understand how the elastic response and the formation …

Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering

AYL Sim, J Lipfert, D Herschlag, S Doniach - Physical Review E—Statistical …, 2012 - APS
Short single-stranded nucleic acids are ubiquitous in biological processes; understanding
their physical properties provides insights to nucleic acid folding and dynamics. We used …

Measuring the conformation and persistence length of single-stranded DNA using a DNA origami structure

E Roth, A Glick Azaria, O Girshevitz, A Bitler… - Nano letters, 2018 - ACS Publications
Measuring the mechanical properties of single-stranded DNA (ssDNA) is a challenge that
has been addressed by different methods lately. The short persistence length, fragile …

Is DNA a good model polymer?

DR Tree, A Muralidhar, PS Doyle, KD Dorfman - Macromolecules, 2013 - ACS Publications
The details surrounding the crossover from wormlike-specific to universal polymeric
behavior has been the subject of debate and confusion even for the simple case of a dilute …