Escherichia coli transcriptome assembly from a compendium of RNA-seq data sets

B Tjaden - RNA biology, 2023 - Taylor & Francis
Owing to the complexities of bacterial RNA biology, the transcriptomes of even the best
studied bacteria are not fully understood. To help elucidate the transcriptional landscape of …

Spatial regulation of reactive oxygen species via G6PD in brown adipocytes supports thermogenic function

JH Sohn, Y Ji, CY Cho, H Nahmgoong, S Lim… - Diabetes, 2021 - Am Diabetes Assoc
Reactive oxygen species (ROS) are associated with various roles of brown adipocytes.
Glucose-6-phosphate dehydrogenase (G6PD) controls cellular redox potentials by …

Efficient analysis of overdispersed data using an accurate computation of the Dirichlet multinomial distribution

SAH Baddar, A Languasco… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Modeling count data using suitable statistical distributions has been instrumental for
analyzing the patterns it conveys. However, failing to address critical aspects, like …

RettDb: the Rett syndrome omics database to navigate the Rett syndrome genomic landscape

N Cillari, G Neri, N Pisanti, P Milazzo, U Borello - Database, 2024 - academic.oup.com
Rett syndrome (RTT) is a neurodevelopmental disorder occurring almost exclusively in
females and leading to a variety of impairments and disabilities from mild to severe. In> 95 …

Genome-wide Analysis of Alternative Gene Splicing Associated with Virulence in the Brown Planthopper Nilaparvata lugens (Hemiptera: Delphacidae)

K Liu, Q Su, K Kang, M Chen, WX Wang… - Journal of Economic …, 2021 - academic.oup.com
Alternative splicing of protein coding genes plays a profound role in phenotypic variation for
many eukaryotic organisms. The development of high-throughput sequencing and …

Epitranscriptomic regulation in breast cancer and PCB-induced liver disease.

B Petri - 2023 - ir.library.louisville.edu
Post-transcriptional RNA modifications including N6-methyladenosine (m6A) regulate
mRNA stability, splicing, and translation. My research examined m6A in two disease models …

Spatial domain identification based on variational autoencoder and single sample network

WF Guo, YC Wang, SY Feng… - 2024 39th Youth …, 2024 - ieeexplore.ieee.org
Due to its ability to reveal tissue heterogeneity, spatial analytic transcriptomic data has been
used to decipher the spatial domain of complex diseases for precise treatment. At present …

Efficient analysis of overdispersed data using an accurate computation of the Dirichlet multinomial distribution

M Migliardi, A Languasco, SAH Baddar - 2024 - research.unipd.it
Modeling count data using suitable statistical distributions has been instrumental for
analyzing the patterns it conveys. However, failing to address critical aspects, like …

[PDF][PDF] Bias Invariant RNA-Seq Data Annotation and Liver Diseases Microbiome Analysis

H Wartmann - 2021 - ediss.sub.uni-hamburg.de
Next-generation sequencing has become so cheap and ubiquitous that the amount of
publicly available data is growing exponentially. Large public repositories have been …