Performance of MALDI‐TOF MS platforms for fungal identification

C Cassagne, AC Normand, C L'Ollivier, S Ranque… - Mycoses, 2016 - Wiley Online Library
Matrix‐assisted laser desorption/ionisation mass spectrometry (MALDI‐TOF MS) is
increasingly used by clinical microbiology laboratories to cope with the need for rapid, cost …

Mass spectrometry imaging to detect lipid biomarkers and disease signatures in cancer

M Holzlechner, E Eugenin, B Prideaux - Cancer reports, 2019 - Wiley Online Library
Background Current methods to identify, classify, and predict tumor behavior mostly rely on
histology, immunohistochemistry, and molecular determinants. However, better predictive …

Wavelet-based functional mixed models

JS Morris, RJ Carroll - Journal of the Royal Statistical Society …, 2006 - academic.oup.com
Increasingly, scientific studies yield functional data, in which the ideal units of observation
are curves and the observed data consist of sets of curves that are sampled on a fine grid …

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis

C Yang, Z He, W Yu - BMC bioinformatics, 2009 - Springer
Background In mass spectrometry (MS) based proteomic data analysis, peak detection is an
essential step for subsequent analysis. Recently, there has been significant progress in the …

Normalization in MALDI-TOF imaging datasets of proteins: practical considerations

SO Deininger, DS Cornett, R Paape, M Becker… - Analytical and …, 2011 - Springer
Normalization is critically important for the proper interpretation of matrix-assisted laser
desorption/ionization (MALDI) imaging datasets. The effects of the commonly used …

Integrating multiplex immunofluorescent and mass spectrometry imaging to map myeloid heterogeneity in its metabolic and cellular context

P Goossens, C Lu, J Cao, MJ Gijbels, JMH Karel… - Cell metabolism, 2022 - cell.com
Cells often adopt different phenotypes, dictated by tissue-specific or local signals such as
cell-cell and cell-matrix contacts or molecular micro-environment. This holds in extremis for …

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS

M Bellew, M Coram, M Fitzgibbon, M Igra… - …, 2006 - academic.oup.com
Motivation: Comparing two or more complex protein mixtures using liquid chromatography
mass spectrometry (LC-MS) requires multiple analysis steps to locate and quantitate natural …

Processing MALDI mass spectra to improve mass spectral direct tissue analysis

JL Norris, DS Cornett, JA Mobley, M Andersson… - International journal of …, 2007 - Elsevier
Profiling and imaging biological specimens using MALDI mass spectrometry has significant
potential to contribute to our understanding and diagnosis of disease. The technique is …

SpectralAnalysis: software for the masses

AM Race, AD Palmer, A Dexter, RT Steven… - Analytical …, 2016 - ACS Publications
The amount of data produced by spectral imaging techniques, such as mass spectrometry
imaging, is rapidly increasing as technology and instrumentation advances. This, combined …

A novel histology-directed strategy for MALDI-MS tissue profiling that improves throughput and cellular specificity in human breast cancer

DS Cornett, JA Mobley, EC Dias, M Andersson… - Molecular & Cellular …, 2006 - ASBMB
We describe a novel tissue profiling strategy that improves the cellular specificity and
analysis throughput of protein profiles obtained by direct MALDI analysis. The new approach …