FPGA-based distributed computing microarchitecture for complex physical dynamics investigation

G Borgese, C Pace, P Pantano… - IEEE Transactions on …, 2013 - ieeexplore.ieee.org
In this paper, we present a distributed computing system, called DCMARK, aimed at solving
partial differential equations at the basis of many investigation fields, such as solid state …

Reconfigurable implementation of a CNN-UM platform for fast dynamical systems simulation

G Borgese, C Pace, P Pantano, E Bilotta - Applications in Electronics …, 2014 - Springer
In this work we present a distributed computing system, called DCMARK, aimed at solving
partial differential equations at the basis of many investigation fields such as Solid State …

Performance optimisation strategies for automatically generated FPGA accelerators for biomedical models

T Yu, J Oppermann, C Bradley… - … Practice and Experience, 2016 - Wiley Online Library
Biomedical modelling that is mathematically described by ordinary differential equations
(ODEs) is often one of the most computationally intensive parts of simulations. With high …

Odost: Automatic hardware acceleration for biomedical model integration

T Yu, C Bradley, O Sinnen - ACM Transactions on Reconfigurable …, 2016 - dl.acm.org
Dynamic biomedical systems are mathematically described by Ordinary Differential
Equations (ODEs) and their solution is often one of the most computationally intensive parts …

Pipeline scheduling with input port constraints for an FPGA-Based biochemical simulator

T Ishimori, H Yamada, Y Shibata, Y Osana… - … Architectures, Tools and …, 2009 - Springer
This paper discusses design methodology of high-throughput arithmetic pipeline modules
for an FPGA-based biochemical simulator. Since limitation of data-input bandwidth caused …

Automatic pipeline construction focused on similarity of rate law functions for an FPGA-based biochemical simulator

H Yamada, Y Ogawa, T Ooya, T Ishimori… - IPSJ Transactions on …, 2010 - jstage.jst.go.jp
For FPGA-based scientific simulation systems, hardware design technique that can reduce
required amount of hardware resources is a key issue, since the size of simulation target is …

Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator

T Ooya, H Yamada, T Ishimori, Y Shibata… - … Conference on Field …, 2009 - ieeexplore.ieee.org
One of the obvious advantages of FPGA-based reconfigurable computing is customizability
of a tradeoff point between performance and hardware costs. However, this tradeoff has …

Hardware simulation of yeast glycolytic oscillations

JE Duarte, J Velasco-Medina… - 2011 IEEE International …, 2011 - ieeexplore.ieee.org
This paper presents the design of a hardware simulator of biological processes described by
chemical-kinetic equations. The simulator is made up of processing elements that use …

Design of embedded digital systems for data handling and elaboration in industrial and scientific applications

G Borgese - 2013 - tesidottorato.depositolegale.it
Nowadays, in several research fields, both industrial and scientific, fast and efficient data
handling and elaboration is more and more important, especially in view of the more and …

A datapath classification method for FPGA-based scientific application accelerator systems

Y Ogawa, T Ooya, Y Osana, M Yoshimi… - … Conference on Field …, 2010 - ieeexplore.ieee.org
Resource reduction design techniques play an important role to implement large-scale
FPGA-based accelerator systems in floating point applications since available resources on …