MicroRNA targeting

H Ghanbarian, MT Yıldız, Y Tutar - miRNomics: MicroRNA Biology and …, 2022 - Springer
MicroRNAs (miRNAs) are small noncoding elements that play essential roles in the
posttranscriptional regulation of biochemical processes. miRNAs recognize and target …

Prediction of linear cationic antimicrobial peptides active against gram-negative and gram-positive bacteria based on machine learning models

ÜG Söylemez, M Yousef, Z Kesmen, ME Büyükkiraz… - Applied Sciences, 2022 - mdpi.com
Antimicrobial peptides (AMPs) are considered as promising alternatives to conventional
antibiotics in order to overcome the growing problems of antibiotic resistance …

MicroRNA categorization using sequence motifs and k-mers

M Yousef, W Khalifa, İE Acar, J Allmer - BMC bioinformatics, 2017 - Springer
Background Post-transcriptional gene dysregulation can be a hallmark of diseases like
cancer and microRNAs (miRNAs) play a key role in the modulation of translation efficiency …

44 current challenges in miRNomics

B Akgül, PF Stadler, LJ Hawkins… - … : MicroRNA Biology and …, 2022 - Springer
Mature microRNAs (miRNAs) are short RNA sequences about 18–24 nucleotide long, which
provide the recognition key within RISC for the posttranscriptional regulation of target RNAs …

Computational detection of microRNA targets

PG Nachtigall, LA Bovolenta - miRNomics: MicroRNA Biology and …, 2022 - Springer
MicroRNAs (miRNAs) are small noncoding RNAs that are recognized as posttranscriptional
regulators of gene expression. These molecules have been shown to play important roles in …

Ensemble classifiers for multiclass microRNA classification

L Odenthal, J Allmer, M Yousef - miRNomics: MicroRNA Biology and …, 2022 - Springer
Gene regulation is of utmost importance to cell homeostasis; thus, any dysregulation in it
often leads to disease. MicroRNAs (miRNAs) are involved in posttranscriptional gene …

Distinguishing between intra-genomic helitron families using time-frequency features and random forest approaches

R Touati, I Messaoudi, AE Oueslati, Z Lachiri - … Signal Processing and …, 2019 - Elsevier
Since its discovery in the promoter of ADC1 (Arginine Decarboxylase 1) gene in Arabidopsis
thaliana, the helitron never stopped drawing the attention of researchers. Helitrons belong to …

Antimicrobial peptide activity prediction using machine learning methods

ÜG Söylemez - 2023 - acikerisim.agu.edu.tr
Antimicrobial peptides (AMPs) are considered as promising alternatives to conventional
antibiotics in order to overcome the growing problems of antibiotic resistance …

Prediction of Linear Cationic Antimicrobial Peptides Active against Gram-Negative and Gram-Positive Bacteria Based on Machine Learning Models

B Bakır Güngör, ÜG Söylemez, M Yousef, Z Kesmen… - 2022 - acikerisim.agu.edu.tr
Antimicrobial peptides (AMPs) are considered as promising alternatives to conventional
antibiotics in order to overcome the growing problems of antibiotic resistance …

44 Current Challenges in miRNomics

B Akgul, PF Stadler, LJ Hawkins, H Hadj-Moussa… - miRNomics - Springer
Mature microRNAs (miRNAs) are short RNA sequences about 18–24 nucleotide long, which
provide the recognition key within RISC for the posttranscriptional regulation of target RNAs …