Highly parallel microbial diagnostics using oligonucleotide microarrays

A Loy, L Bodrossy - Clinica chimica acta, 2006 - Elsevier
Oligonucleotide microarrays are highly parallel hybridization platforms, allowing rapid and
simultaneous identification of many different microorganisms and viruses in a single assay …

Primer3Plus, an enhanced web interface to Primer3

A Untergasser, H Nijveen, X Rao… - Nucleic acids …, 2007 - academic.oup.com
Abstract Here we present Primer3Plus, a new web interface to the popular Primer3 primer
design program as an enhanced alternative for the CGI-scripts that come with Primer3 …

PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification

A Spandidos, X Wang, H Wang… - Nucleic acids research, 2010 - academic.oup.com
ABSTRACT PrimerBank (http://pga. mgh. harvard. edu/primerbank/) is a public resource for
the retrieval of human and mouse primer pairs for gene expression analysis by PCR and …

QuantPrime–a flexible tool for reliable high-throughput primer design for quantitative PCR

S Arvidsson, M Kwasniewski, DM Riaño-Pachón… - BMC …, 2008 - Springer
Background Medium-to large-scale expression profiling using quantitative polymerase chain
reaction (qPCR) assays are becoming increasingly important in genomics research. A major …

A comprehensive collection of experimentally validated primers for Polymerase Chain Reaction quantitation of murine transcript abundance

A Spandidos, X Wang, H Wang, S Dragnev, T Thurber… - BMC genomics, 2008 - Springer
Background Quantitative polymerase chain reaction (QPCR) is a widely applied analytical
method for the accurate determination of transcript abundance. Primers for QPCR have …

[2] The Agilent In Situ‐Synthesized Microarray Platform

PK Wolber, PJ Collins, AB Lucas, A De Witte… - Methods in …, 2006 - Elsevier
Microarray technology has become a standard tool in many laboratories. Agilent
Technologies manufactures a variety of catalog and custom long‐oligonucleotide (60‐mer) …

DNA microarray detection of antimicrobial resistance genes in diverse bacteria

JG Frye, T Jesse, F Long, G Rondeau… - International journal of …, 2006 - Elsevier
High throughput genotyping is essential for studying the spread of multiple antimicrobial
resistance. A test oligonucleotide microarray designed to detect 94 antimicrobial resistance …

[4] Microarray Oligonucleotide Probes

DP Kreil, RR Russell, S Russell - Methods in enzymology, 2006 - Elsevier
Oligonucleotide probes are increasingly the method of choice for many modern DNA
microarray applications. They provide higher target specificity, probe selection gives …

Comprehensive DNA signature discovery and validation

AM Phillippy, JA Mason, K Ayanbule… - PLoS computational …, 2007 - journals.plos.org
DNA signatures are nucleotide sequences that can be used to detect the presence of an
organism and to distinguish that organism from all other species. Here we describe Insignia …

An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes

KL Brigand, R Russell, C Moreilhon… - Nucleic Acids …, 2006 - academic.oup.com
Two collections of oligonucleotides have been designed for preparing pangenomic human
and mouse microarrays. A total of 148 993 and 121 703 oligonucleotides were designed …