Comprehensive identification of RNA-binding domains in human cells

A Castello, B Fischer, CK Frese, R Horos, AM Alleaume… - Molecular cell, 2016 - cell.com
Mammalian cells harbor more than a thousand RNA-binding proteins (RBPs), with half of
these employing unknown modes of RNA binding. We developed RBDmap to determine the …

Unconventional RNA‐binding proteins step into the virus–host battlefront

M Garcia‐Moreno, AI Järvelin… - Wiley Interdisciplinary …, 2018 - Wiley Online Library
The crucial participation of cellular RNA‐binding proteins (RBPs) in virtually all steps of virus
infection has been known for decades. However, most of the studies characterizing this …

[HTML][HTML] Cyclic [G (2′, 5′) pA (3′, 5′) p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase

P Gao, M Ascano, Y Wu, W Barchet, BL Gaffney… - Cell, 2013 - cell.com
Recent studies identified cyclic GMP-AMP (cGAMP) as a metazoan second messenger
triggering an interferon response. cGAMP is generated from GTP and ATP by cytoplasmic …

High-resolution mapping of RNA-binding regions in the nuclear proteome of embryonic stem cells

C He, S Sidoli, R Warneford-Thomson, DC Tatomer… - Molecular cell, 2016 - cell.com
Interactions between noncoding RNAs and chromatin proteins play important roles in gene
regulation, but the molecular details of most of these interactions are unknown. Using …

Codon bias confers stability to human mRNA s

F Hia, SF Yang, Y Shichino, M Yoshinaga… - EMBO …, 2019 - embopress.org
Codon bias has been implicated as one of the major factors contributing to mRNA stability in
several model organisms. However, the molecular mechanisms of codon bias on mRNA …

An I for an A: dynamic regulation of adenosine deamination-mediated RNA editing

C Vesely, MF Jantsch - Genes, 2021 - mdpi.com
RNA-editing by adenosine deaminases acting on RNA (ADARs) converts adenosines to
inosines in structured RNAs. Inosines are read as guanosines by most cellular machineries …

Regulation of RNA editing by RNA-binding proteins in human cells

G Quinones-Valdez, SS Tran, HI Jun, JH Bahn… - Communications …, 2019 - nature.com
Abstract Adenosine-to-inosine (A-to-I) editing, mediated by the ADAR enzymes, diversifies
the transcriptome by altering RNA sequences. Recent studies reported global changes in …

Structural and functional analysis of MiD51, a dynamin receptor required for mitochondrial fission

V Richter, CS Palmer, LD Osellame, AP Singh… - Journal of Cell …, 2014 - rupress.org
Mitochondrial fission is important for organelle transport, inheritance, and turnover, and
alterations in fission are seen in neurological disease. In mammals, mitochondrial fission is …

Regulated dicing of pre-mir-144 via reshaping of its terminal loop

R Shang, DA Kretov, SI Adamson, T Treiber… - Nucleic acids …, 2022 - academic.oup.com
Although the route to generate microRNAs (miRNAs) is often depicted as a linear series of
sequential and constitutive cleavages, we now appreciate multiple alternative pathways as …

Unbiased identification of trans regulators of ADAR and A-to-I RNA editing

EC Freund, AL Sapiro, Q Li, S Linder, JJ Moresco… - Cell Reports, 2020 - cell.com
Adenosine-to-inosine RNA editing is catalyzed by adenosine deaminase acting on RNA
(ADAR) enzymes that deaminate adenosine to inosine. Although many RNA editing sites …