Machine learning for microbiologists

F Asnicar, AM Thomas, A Passerini… - Nature Reviews …, 2024 - nature.com
Abstract Machine learning is increasingly important in microbiology where it is used for tasks
such as predicting antibiotic resistance and associating human microbiome features with …

The role of the canine gut microbiome and metabolome in health and gastrointestinal disease

R Pilla, JS Suchodolski - Frontiers in veterinary science, 2020 - frontiersin.org
The gut microbiome contributes to host metabolism, protects against pathogens, educates
the immune system, and, through these basic functions, affects directly or indirectly most …

The gastrointestinal microbiome: a review

PC Barko, MA McMichael, KS Swanson… - Journal of veterinary …, 2018 - Wiley Online Library
The gastrointestinal microbiome is a diverse consortium of bacteria, archaea, fungi,
protozoa, and viruses that inhabit the gut of all mammals. Studies in humans and other …

Probiotics (Lactobacillus plantarum HNU082) supplementation relieves ulcerative colitis by affecting intestinal barrier functions, immunity-related gene expression, gut …

Y Wu, R Jha, A Li, H Liu, Z Zhang, C Zhang… - Microbiology …, 2022 - Am Soc Microbiol
Probiotics can effectively improve ulcerative colitis (UC), but the mechanism is still unclear.
Here, shotgun metagenome and transcriptome analyses were performed to explore the …

Microbial network disturbances in relapsing refractory Crohn's disease

B Yilmaz, P Juillerat, O Øyås, C Ramon, FD Bravo… - Nature medicine, 2019 - nature.com
Inflammatory bowel diseases (IBD) can be broadly divided into Crohn's disease (CD) and
ulcerative colitis (UC) from their clinical phenotypes. Over 150 host susceptibility genes have …

Dietary effects on human gut microbiome diversity

Z Xu, R Knight - British Journal of Nutrition, 2015 - cambridge.org
The human gut harbours diverse and abundant microbes, forming a complex ecological
system that interacts with host and environmental factors. In this article, we summarise …

A dysbiosis index to assess microbial changes in fecal samples of dogs with chronic inflammatory enteropathy

MK AlShawaqfeh, B Wajid, Y Minamoto… - FEMS microbiology …, 2017 - academic.oup.com
Recent studies have identified various bacterial groups that are altered in dogs with chronic
inflammatory enteropathies (CE) compared to healthy dogs. The study aim was to use …

Analysis of the gut microbiome in dogs and cats

JS Suchodolski - Veterinary Clinical Pathology, 2022 - Wiley Online Library
The gut microbiome is an important immune and metabolic organ. Intestinal bacteria
produce various metabolites that influence the health of the intestine and other organ …

Effects of metronidazole on the fecal microbiome and metabolome in healthy dogs

R Pilla, FP Gaschen, JW Barr, E Olson… - Journal of veterinary …, 2020 - Wiley Online Library
Background Metronidazole has a substantial impact on the gut microbiome. However, the
recovery of the microbiome after discontinuation of administration, and the metabolic …

Metabolite profiling of human‐originated Lachnospiraceae at the strain level

R Abdugheni, WZ Wang, YJ Wang, MX Du, FL Liu… - Imeta, 2022 - Wiley Online Library
The human gastrointestinal (GI) tract harbors diverse microbes, and the family
Lachnospiraceae is one of the most abundant and widely occurring bacterial groups in the …