[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications

Y Wang, Y Zhao, A Bollas, Y Wang, KF Au - Nature biotechnology, 2021 - nature.com
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …

Blazed oblique plane microscopy reveals scale-invariant inference of brain-wide population activity

M Hoffmann, J Henninger, J Veith, L Richter… - Nature …, 2023 - nature.com
Due to the size and opacity of vertebrate brains, it has until now been impossible to
simultaneously record neuronal activity at cellular resolution across the entire adult brain. As …

A model of discovery: the role of imaging established and emerging non-mammalian models in neuroscience

EM Haynes, TK Ulland, KW Eliceiri - Frontiers in Molecular …, 2022 - frontiersin.org
Rodents have been the dominant animal models in neurobiology and neurological disease
research over the past 60 years. The prevalent use of rats and mice in neuroscience …

The full-length transcriptome of C. elegans using direct RNA sequencing

NP Roach, N Sadowski, AF Alessi, W Timp… - Genome …, 2020 - genome.cshlp.org
Current transcriptome annotations have largely relied on short read lengths intrinsic to the
most widely used high-throughput cDNA sequencing technologies. For example, in the …

Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution

CS Wu, ZY Ma, GD Zheng, SM Zou, XJ Zhang… - BMC genomics, 2022 - Springer
Background The grass carp has great economic value and occupies an important
evolutionary position. Genomic information regarding this species could help better …

Oxytocin-mediated social preference and socially reinforced reward learning in the miniature fish Danionella cerebrum

A Penalva-Tena, J Bedke, A Gaudin, JP Barrios… - Current Biology, 2025 - cell.com
Integrative studies of diverse neuronal networks that govern social behavior are hindered by
a lack of methods to record neural activity comprehensively across the entire brain. The …

HASLR: fast hybrid assembly of long reads

E Haghshenas, H Asghari, J Stoye, C Chauve, F Hach - Iscience, 2020 - cell.com
Third-generation sequencing technologies from companies such as Oxford Nanopore and
Pacific Biosciences have paved the way for building more contiguous and potentially gap …

The emerging vertebrate model species for neurophysiological studies is Danionella cerebrum, new species (Teleostei: Cyprinidae)

R Britz, KW Conway, L Rüber - Scientific reports, 2021 - nature.com
The four described species of Danionella are tiny, transparent fishes that mature at sizes
between 10–15 mm, and represent some of the most extreme cases of vertebrate …

Development of sound production in Danionella cerebrum

AH Groneberg, LE Dressler… - Journal of …, 2024 - journals.biologists.com
Acoustic signalling, integral to intraspecific communication and reproductive behaviour,
undergoes notable changes during an animal's ontogenetic development. The onset and …

Chromosome‐level genome assembly of the greenfin horse‐faced filefish (Thamnaconus septentrionalis) using Oxford Nanopore PromethION sequencing and Hi‐C …

L Bian, F Li, J Ge, P Wang, Q Chang… - Molecular Ecology …, 2020 - Wiley Online Library
The greenfin horse‐faced filefish, Thamnaconus septentrionalis, is a valuable commercial
fish species that is widely distributed in the Indo‐West Pacific Ocean. This fish has …