Unveiling the potential of systems biology in biotechnology and biomedical research

S Saranya, L Thamanna, P Chellapandi - Systems Microbiology and …, 2024 - Springer
Abstract “In silico organisms” are computational genome-scale metabolic models used in
systems and synthetic biology developed by constraint-based metabolic simulations using …

Clavulanic Acid Production by Streptomyces clavuligerus: Insights from Systems Biology, Strain Engineering, and Downstream Processing

VA López-Agudelo, D Gómez-Ríos, H Ramirez-Malule - Antibiotics, 2021 - mdpi.com
Clavulanic acid (CA) is an irreversible β-lactamase enzyme inhibitor with a weak
antibacterial activity produced by Streptomyces clavuligerus (S. clavuligerus). CA is typically …

Uses of multi-objective flux analysis for optimization of microbial production of secondary metabolites

M Griesemer, A Navid - Microorganisms, 2023 - mdpi.com
Secondary metabolites are not essential for the growth of microorganisms, but they play a
critical role in how microbes interact with their surroundings. In addition to this important …

[HTML][HTML] Tuning of fed-batch cultivation of Streptomyces clavuligerus for enhanced Clavulanic Acid production based on genome-scale dynamic modeling

D Gómez-Ríos, H Ramírez-Malule, P Neubauer… - Biochemical …, 2022 - Elsevier
Streptomyces clavuligerus (S. clavuligerus) is a filamentous Gram-positive bacterial
producer of the β-lactamase inhibitor clavulanic acid (CA). Antibiotics biosynthesis and …

Robustifying Experimental Tracer Design for13C-Metabolic Flux Analysis

M Beyß, VD Parra-Peña, H Ramirez-Malule… - … in Bioengineering and …, 2021 - frontiersin.org
13C metabolic flux analysis (MFA) has become an indispensable tool to measure metabolic
reaction rates (fluxes) in living organisms, having an increasingly diverse range of …

[HTML][HTML] Clavulanic Acid Overproduction: A Review of Environmental Conditions, Metabolic Fluxes, and Strain Engineering in Streptomyces clavuligerus

D Gómez-Ríos, LM Gómez-Gaona, H Ramírez-Malule - Fermentation, 2024 - mdpi.com
Clavulanic acid is a potent β-lactamase inhibitor produced by Streptomyces clavuligerus,
widely used in combination with β-lactam antibiotics to combat antimicrobial resistance. This …

Promoting Butenyl-spinosyn Production Based on Omics Research and Metabolic Network Construction in Saccharopolyspora pogona

J Rang, L Cao, L Shuai, Y Liu, Z Zhu, Z Xia… - Journal of Agricultural …, 2022 - ACS Publications
Understanding the metabolism of Saccharopolyspora pogona on a global scale is essential
for manipulating its metabolic capabilities to improve butenyl-spinosyn biosynthesis. Here …

Enhanced Oxytetracycline Production by Streptomyces rimosus in Submerged Co-Cultures with Streptomyces noursei

T Boruta, A Ścigaczewska - Molecules, 2021 - mdpi.com
In the present study, Streptomyces rimosus was confronted with Streptomyces noursei,
Penicillium rubens, Aspergillus niger, Chaetomium globosum, or Mucor racemosus in two …

TCA cycle and its relationship with clavulanic acid production: a further interpretation by using a reduced genome-scale metabolic model of Streptomyces clavuligerus

H Ramirez-Malule, VA López-Agudelo, D Gómez-Ríos… - Bioengineering, 2021 - mdpi.com
Streptomyces clavuligerus (S. clavuligerus) has been widely studied for its ability to produce
clavulanic acid (CA), a potent inhibitor of β-lactamase enzymes. In this study, S. clavuligerus …

Rational selection of culture medium for clavulanic acid production by Streptomyces clavuligerus based on a metabolic modeling approach

D Gómez-Riosa, H Ramírez-Malule… - Agriculture and …, 2022 - li01.tci-thaijo.org
Importance of the work: Clavulanic acid (CA) is a β-lactam antibiotic produced by
Streptomyces clavuligerus and is an inhibitor of β-lactamase enzymes responsible for …