Culture-independent methods for studying environmental microorganisms: methods, application, and perspective

C Su, L Lei, Y Duan, KQ Zhang, J Yang - Applied microbiology and …, 2012 - Springer
Since the application of molecular methods, culture-independent methods (CIMs) have been
developed to study microbial communities from various environments. In the past 20 years …

Emerging topics in marine methane biogeochemistry

DL Valentine - Annual review of marine science, 2011 - annualreviews.org
Our knowledge of physical, chemical, geological and biological processes affecting
methane in the ocean and in underlying sediments is expanding at a rapid pace. On first …

Identification of novel methane-, ethane-, and propane-oxidizing bacteria at marine hydrocarbon seeps by stable isotope probing

MC Redmond, DL Valentine… - Applied and …, 2010 - Am Soc Microbiol
Marine hydrocarbon seeps supply oil and gas to microorganisms in sediments and overlying
water. We used stable isotope probing (SIP) to identify aerobic bacteria oxidizing gaseous …

In situ development of a methanotrophic microbiome in deep-sea sediments

SE Ruff, J Felden, HR Gruber-Vodicka… - The ISME …, 2019 - academic.oup.com
Emission of the greenhouse gas methane from the seabed is globally controlled by marine
aerobic and anaerobic methanotrophs gaining energy via methane oxidation. However, the …

Influence of biochar addition on methane metabolism during thermophilic phase of composting

T Sonoki, T Furukawa, K Jindo, K Suto… - Journal of Basic …, 2013 - Wiley Online Library
CH4 is known to be generated during the most active phase of composting, even in well‐
managed composting piles. In this manuscript, we studied the influence of biochar on the …

Origin and fate of methane in the Eastern Tropical North Pacific oxygen minimum zone

PM Chronopoulou, F Shelley, WJ Pritchard… - The ISME …, 2017 - academic.oup.com
Oxygen minimum zones (OMZs) contain the largest pools of oceanic methane but its origin
and fate are poorly understood. High-resolution (< 15 m) water column profiles revealed a …

The Baltic Sea methane pockmark microbiome: The new insights into the patterns of relative abundance and ANME niche separation

TR Iasakov, TA Kanapatskiy, SV Toshchakov… - Marine Environmental …, 2022 - Elsevier
Pockmarks are important “pumps”, which are believed to play a significant role in the global
methane cycling and harboring a unique assemblage of very diverse prokaryotes. This study …

Bathyarchaeia occurrence in rich methane sediments from a Brazilian ría

RG Romano, AG Bendia, JCF Moreira… - Estuarine, Coastal and …, 2021 - Elsevier
Previous studies reported methane gas (CH 4) reservoirs in Saco do Mamanguá ría marine
sediments (Rio de Janeiro, Brazil). Knowing that methane-related microbiomes are still …

Metagenomic binning recovers a transcriptionally active gammaproteobacterium linking methanotrophy to partial denitrification in an anoxic oxygen minimum zone

CC Padilla, AD Bertagnolli, LA Bristow… - Frontiers in Marine …, 2017 - frontiersin.org
Diverse planktonic microorganisms play a crucial role in mediating methane flux from the
ocean to the atmosphere. The distribution and composition of the marine methanotroph …

The bacteriohopanepolyol inventory of novel aerobic methane oxidising bacteria reveals new biomarker signatures of aerobic methanotrophy in marine systems

D Rush, KA Osborne, D Birgel, A Kappler, H Hirayama… - PloS one, 2016 - journals.plos.org
Aerobic methane oxidation (AMO) is one of the primary biologic pathways regulating the
amount of methane (CH4) released into the environment. AMO acts as a sink of CH4 …