Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology

FJ O'Reilly, J Rappsilber - Nature structural & molecular biology, 2018 - nature.com
Over the past decade, cross-linking mass spectrometry (CLMS) has developed into a robust
and flexible tool that provides medium-resolution structural information. CLMS data provide …

Crosslinking and mass spectrometry: an integrated technology to understand the structure and function of molecular machines

A Leitner, M Faini, F Stengel, R Aebersold - Trends in biochemical …, 2016 - cell.com
In recent years, chemical crosslinking of protein complexes and the identification of
crosslinked residues by mass spectrometry (XL-MS; sometimes abbreviated as CX-MS) has …

Modelling protein complexes with crosslinking mass spectrometry and deep learning

K Stahl, R Warneke, L Demann, R Bremenkamp… - Nature …, 2024 - nature.com
Scarcity of structural and evolutionary information on protein complexes poses a challenge
to deep learning-based structure modelling. We integrate experimental distance restraints …

[HTML][HTML] The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

J Rappsilber - Journal of structural biology, 2011 - Elsevier
After more than a decade of method development, cross-linking in combination with mass
spectrometry and bioinformatics is finally coming of age. This technology now provides …

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

A Leitner, T Walzthoeni, A Kahraman, F Herzog… - Molecular & Cellular …, 2010 - ASBMB
Chemical cross-linking of reactive groups in native proteins and protein complexes in
combination with the identification of cross-linked sites by mass spectrometry has been in …

Proteomics: a pragmatic perspective

P Mallick, B Kuster - Nature biotechnology, 2010 - nature.com
The evolution of mass spectrometry–based proteomic technologies has advanced our
understanding of the complex and dynamic nature of proteomes while concurrently …

Leveraging crosslinking mass spectrometry in structural and cell biology

A Graziadei, J Rappsilber - Structure, 2022 - cell.com
Crosslinking mass spectrometry (crosslinking-MS) is a versatile tool providing structural
insights into protein conformation and protein-protein interactions. Its medium-resolution …

Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes

A Kao, C Chiu, D Vellucci, Y Yang, VR Patel… - Molecular & Cellular …, 2011 - ASBMB
Knowledge of elaborate structures of protein complexes is fundamental for understanding
their functions and regulations. Although cross-linking coupled with mass spectrometry (MS) …

Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex

C Ciferri, S Pasqualato, E Screpanti, G Varetti… - Cell, 2008 - cell.com
Kinetochores are proteinaceous assemblies that mediate the interaction of chromosomes
with the mitotic spindle. The 180 kDa Ndc80 complex is a direct point of contact between …

The life and miracles of kinetochores

S Santaguida, A Musacchio - The EMBO journal, 2009 - embopress.org
Kinetochores are large protein assemblies built on chromosomal loci named centromeres.
The main functions of kinetochores can be grouped under four modules. The first module, in …